#NEXUS BEGIN TAXA; dimensions ntax=4; taxlabels A B C D; END; BEGIN CHARACTERS; title protein; dimensions nchar=11; format datatype=protein missing=? gap=- ; matrix A -MQVADISL-? B -------MA-- C -MG----FS-- D -MG--DVEKGQ ; END; BEGIN TREES; title tb_1; tree 'basic bush' = ((A:1,B:1):1,(C:1,D:1):1); END;