#NEXUS

[This file is based on PF00034_39.nex downloaded from molevol.org/nexplorer]

BEGIN TAXA;
	TITLE PF00034_39;
	DIMENSIONS ntax=6;
	TAXLABELS  Chaetoceros_gracilis_BAC54099.1 Chlorella_vulgaris_BAC76447.1 Chlorella_vulgaris_BAC76448.1 Chlamydomonas_reinhardtii_AAB00729.1 Phaeodactylum_tricornutum_AAO43197.1 Arabidopsis_thaliana_BAB10887.1;
END;

BEGIN CHARACTERS;
	TITLE protein;
	LINK taxa=PF00034_39;
	DIMENSIONS ntax=6 nchar=157;
	FORMAT datatype=protein gap=- missing=?;
	MATRIX
	Chlorella_vulgaris_BAC76448.1	---------MAALTICSAAAGKAQAVRSS-AQKPKAVAALPRLATAVG-AAAVLLT--STPAFAGDLTLGQQVFDNNCPRATWAARTACSPEKTLQKAALEQYLEGGFSVASIITQVENGKGAMPAWSGRLDSDEIESVAEYVFKQAEGNLW-----
	Chlorella_vulgaris_BAC76447.1	---------MQRTAVLCSTPNAARAVAQVRTPAPAKLLALKRAATGLG-AAAVVLSTAAAPVLAADLVLGAEVFNNNCAACHAGGQNSVINERTLQKGALEQYLAGGFNVEAITTQVTNGKGAMPAWGDRLDEDEIAAVAAYVFDQASGNKW-----
	Phaeodactylum_tricornutum_AAO43197.1	-------MKLAVIATLLATA-SAFSIQAEFSKVAKGAAAVGVGAVIAA-----------APALAGDVGAGEQIFNANCAACHAGGQNVIMPEKTLEKEALDQYLAGGRTEKSIISQVTGGKNAMPAFGGRLSDEEIANVAAYVLASAEAG-WE----
	Chlamydomonas_reinhardtii_AAB00729.1	------MLQLANRSVRAKAARASQSARSVSCAAAKRGADVAPLTSALAVTASILLTTGAASASAADLALGAQVFNGNCAACHMGGRNSVMPEKTLDKAALEQYLDGGFKVESIIYQVENGKGAMPAWADRLSEEEIQAVAEYVFKQATDAAWKY---
	Arabidopsis_thaliana_BAB10887.1	MESGFCNWKQRCNQCIVELLLELKYVLNVFMKVSCFYGYCGVESLGQTLDIQRG-ATLFNRACIGCHDTGGNIIQPGATLFTKDLERNG--VDTEEEIYRVTYFGKGRMPG---FGEKCTPRGQCTFGPRLQDEEIKLLAEFVKFQADQGWPTVSTD
	Chaetoceros_gracilis_BAC54099.1	-------MKLALIATLATSA-AAFSISPQ--KAAQAGAVAAAIATSVA-----------APAFAGDVAAGEQVFNANCAACHAGGQNVIMPEKTLEKDALEQYLAGGRNEKAVITQVTNGKNAMPAFGGRLSDDDIANVASYVIATSESG-WDE---
	;
END;

BEGIN ASSUMPTIONS;
	TITLE proteinweight;
	LINK taxa=PF00034_39;
	LINK characters=protein;
	WTSET CORE_column_scores (VECTOR TOKENS) = 
	- - 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 3 0 0 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 0 1 1 1 1 1 2 1 1 1 1 3 3 3 3 3 3 4 4 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 3 3 3 3 3 3 3 3 3 3 4 4 3 4 3 3 3 3 3 5 5 5 3 4 4 4 4 4 4 4 4 4 3 4 4 4 4 4 4 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 2 0 1 0 1 0 0 - - -;
END;