#NEXUS

[This file was checked by nexfix.pl, v1.5 on Fri Oct 14 10:39:30 2005]

BEGIN TAXA;
	DIMENSIONS ntax=8;
	TAXLABELS  Anopheles_gambiae_agCT55686 Arabidopsis_thaliana_18404062 Caenorhabditis_elegans_17554758 Drosophila_melanogaster_7295730 Homo_sapiens_4507761 Plasmodium_falciparum_23619579 Saccharomyces_cerevisiae_6322947 Schizosaccharomyces_pombe_19114835;
END;

BEGIN TREES;
	TREE Tree = (Plasmodium_falciparum_23619579:1800,(Arabidopsis_thaliana_18404062:1642,((Schizosaccharomyces_pombe_19114835:837,Saccharomyces_cerevisiae_6322947:837)inode837:705,(Caenorhabditis_elegans_17554758:1220,(Homo_sapiens_4507761:1063,(Anopheles_gambiae_agCT55686:250,Drosophila_melanogaster_7295730:250)inode250:813)inode1063:157)inode1220:322)inode1542:100)inode1642:158)root;
END;

BEGIN CHARACTERS;
	TITLE intron;
	DIMENSIONS nchar=9;
	CHARLABELS
	 '29-2' '41-2' '136-1' '172-1' '223-1' '240-0' '259-1' '326-2' '393-0';
	MATRIX
	Plasmodium_falciparum_23619579	000001000
	Homo_sapiens_4507761	001010010
	Arabidopsis_thaliana_18404062	001010011
	Anopheles_gambiae_agCT55686	100000100
	Schizosaccharomyces_pombe_19114835	000000000
	Caenorhabditis_elegans_17554758	000100100
	Saccharomyces_cerevisiae_6322947	010000000
	Drosophila_melanogaster_7295730	000000000
	;
END;

BEGIN CHARACTERS;
	TITLE protein;
	DIMENSIONS nchar=140;
	MATRIX
	Plasmodium_falciparum_23619579	-----------MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAIEPSLAQLAQKYNCQKLICRKCYARLHPRATNCRNKKCGRTNQLRPKKKLK-
	Homo_sapiens_4507761	-----------MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK-
	Arabidopsis_thaliana_18404062	-----------MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMMLARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK-
	Anopheles_gambiae_agCT55686	QSVPANRHVGNMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRILAQKYNCDKMICRKCYARLHPRATNCRKKKCGHTNNLRPKKKLK-
	Schizosaccharomyces_pombe_19114835	-----------MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKKKCGHTNQLRPKKKLK-
	Caenorhabditis_elegans_17554758	-----------MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKQICRKCYARLPPRASNCRKKKCGHSSELRIKKKLK-
	Saccharomyces_cerevisiae_6322947	-----------MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASKYNCDKSVCRKCYARLPPRATNCRKRKCGHTNQLRPKKKLK-
	Drosophila_melanogaster_7295730	-----------MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRILAQKYNCDKMICRKCYARLHPRATNCRKKKCGHTNNLRPKKKLK-
	;
END;

BEGIN CHARACTERS;
	TITLE dna;
	DIMENSIONS nchar=420;
	MATRIX
	Plasmodium_falciparum_23619579	---------------------------------ATGCAAATTTTTGTAAAAACATTAACTGGAAAAACAATTACCCTTGATGTTGAGCCATCTGATACGATTGAGAATGTTAAGGCAAAAATTCAAGATAAAGAAGGAATTCCTCCTGATCAACAAAGATTAATATTTGCTGGAAAACAATTAGAAGATGGAAGGACCTTATCAGATTATAATATTCAAAAGGAATCAACTTTACACTTGGTTTTAAGATTAAGAGGAGGAGCCATAGAACCATCCTTAGCACAACTAGCTCAAAAATACAATTGCCAAAAATTAATTTGTAGAAAATGTTATGCTAGATTACACCCAAGAGCTACCAACTGCAGAAATAAAAAATGTGGAAGAACCAATCAACTAAGACCAAAGAAAAAACTCAAA---
	Homo_sapiens_4507761	---------------------------------ATGCAGATCTTTGTGAAGACCCTCACTGGCAAAACCATCACCCTTGAGGTCGAGCCCAGTGACACCATTGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGACCAGCAGCGTCTGATATTTGCCGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTACAACATCCAGAAAGAGTCCACCCTGCACCTGGTGTTGCGCCTGCGAGGTGGCATTATTGAGCCTTCTCTCCGCCAGCTTGCCCAGAAATACAACTGCGACAAGATGATCTGCCGCAAGTGCTATGCTCGCCTTCACCCTCGTGCTGTCAACTGCCGCAAGAAGAAGTGTGGTCACACCAACAACCTGCGTCCCAAGAAGAAGGTCAAA---
	Arabidopsis_thaliana_18404062	---------------------------------ATGCAGATTTTCGTGAAAACGCTAACCGGCAAGACCATCACCCTCGAGGTCGAGAGCAGTGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAAGAAGGAATTCCTCCGGACCAGCAGAGGTTGATCTTCGCCGGAAAACAGCTTGAAGATGGTCGTACCTTGGCTGACTACAACATCCAGAAAGAGTCGACTTTGCATCTTGTTCTGAGGCTTAGGGGAGGTATCATTGAGCCTTCATTGATGATGTTGGCTCGTAAGTATAACCAAGACAAAATGATTTGTCGCAAGTGTTATGCTCGTCTCCACCCAAGAGCTGTGAACTGCAGGAAGAAGAAGTGTGGCCATAGCAACCAGTTGAGGCCAAAGAAGAAGATCAAG---
	Anopheles_gambiae_agCT55686	CAAAGTGTACCAGCGAACAGACACGTTGGAAACATGCAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACACTTGAGGTCGAGCCTTCGGACACGATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACTCTCTCCGACTACAACATTCAGAAGGAATCGACCCTTCATCTGGTGCTGCGACTCCGTGGTGGTATCATTGAGCCGTCTCTGCGTATCTTGGCTCAAAAGTACAACTGCGACAAGATGATTTGCCGCAAGTGCTACGCACGCCTGCACCCGAGAGCGACCAACTGCCGCAAGAAAAAGTGTGGCCACACCAACAACCTGCGCCCGAAGAAGAAGCTGAAG---
	Schizosaccharomyces_pombe_19114835	---------------------------------ATGCAGATTTTTGTCAAGACTTTGACTGGTAAAACTATAACCCTAGAGGTGGAATCCTCTGACACTATTGACAATGTCAAGAGTAAGATTCAGGACAAGGAAGGAATTCCTCCTGATCAACAACGATTGATTTTTGCCGGAAAGCAGTTGGAGGATGGTCGTACTCTTTCTGATTACAATATCCAAAAAGAGTCCACTCTTCACTTGGTTCTCCGTCTTCGTGGTGGTATCATTGAGCCCTCTTTGAAGGCATTGGCTTCCAAGTACAACTGTGAGAAGCAAATCTGCCGTAAATGCTATGCTCGTCTTCCTCCTCGTGCCACTAACTGCCGTAAGAAGAAATGTGGTCATACCAACCAACTCCGTCCTAAGAAGAAGCTTAAG---
	Caenorhabditis_elegans_17554758	---------------------------------ATGCAAATCTTCGTCAAGACTCTGACGGGTAAGACTATTACCCTCGAAGTCGAGGCTTCCGATACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCACCAGATCAGCAAAGATTGATCTTCGCCGGAAAGCAACTCGAGGATGGACGTACTCTCTCCGACTACAACATCCAAAAGGAGTCTACTCTCCACTTGGTGCTCCGTCTTCGTGGAGGAATCATCGAGCCATCTCTCCGTCAGCTCGCCCAGAAGTACAACTGCGACAAGCAGATCTGCAGAAAGTGCTATGCTCGTCTCCCACCACGTGCCAGCAACTGCAGAAAGAAGAAGTGCGGACACTCCAGCGAGCTCCGCATCAAGAAGAAGCTGAAG---
	Saccharomyces_cerevisiae_6322947	---------------------------------ATGCAAATCTTCGTTAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACCATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACTCTATCTGACTACAACATCCAAAAGGAATCCACTTTACATTTGGTCTTGAGATTAAGAGGTGGTATCATTGAACCATCTTTGAAAGCCTTGGCTTCCAAATACAACTGTGACAAATCTGTTTGTCGTAAATGTTACGCCAGATTACCACCAAGAGCTACCAACTGTAGAAAGAGAAAGTGTGGTCACACCAACCAATTGCGTCCAAAGAAGAAGTTGAAA---
	Drosophila_melanogaster_7295730	---------------------------------ATGCAGATCTTCGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCTGACACCATCGAGAATGTCAAGGCTAAGATCCAGGATAAGGAGGGCATTCCCCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAACATTCAGAAGGAGTCCACCCTGCACTTGGTGCTCCGCCTGCGTGGTGGTATCATTGAGCCCTCGCTCAGGATTCTGGCCCAGAAGTACAACTGCGACAAGATGATCTGCCGCAAGTGCTACGCCCGTCTGCATCCTCGTGCCACCAACTGCCGCAAGAAGAAGTGCGGACACACCAACAACCTGCGCCCCAAGAAGAAGTTGAAG---
	;
END;

BEGIN SETS;
	TAXSET fungi = Saccharomyces_cerevisiae_6322947 Schizosaccharomyces_pombe_19114835;
	TAXSET invertebrates = Anopheles_gambiae_agCT55686 Caenorhabditis_elegans_17554758 Drosophila_melanogaster_7295730;
	TAXSET plants = Arabidopsis_thaliana_18404062;
	TAXSET protists = Plasmodium_falciparum_23619579;
	TAXSET vertebrates = Homo_sapiens_4507761;
END;