These are scripts that run on top of Bio::SearchIO or generally fit
into the Database search result parsingframework.

fastam9_to_table.PLS -- script which doesn't use Bio::SearchIO but provides fast parsing of FASTA -m9 output to an NCBI m9-like table.
hmmer_to_table.PLS -- script which doesn't use Bio::SearchIO but provides fast parsing of HMMER output into a tabular format.

search2table.PLS -- Turn any Bio::SearchIO parseable report into NCBI m9-like tablular output

filter_search.PLS - produce tabular output, filtering first.