# -*-Perl-*- Test Harness script for Bioperl # $Id: RelationshipType.t 15112 2008-12-08 18:12:38Z sendu $ use strict; BEGIN { use lib '.'; use Bio::Root::Test; test_begin(-tests => 23, -requires_module => 'Graph::Directed'); use_ok('Bio::Ontology::RelationshipType'); use_ok('Bio::Ontology::Ontology'); } my $ont = Bio::Ontology::Ontology->new(-name => "relationship type"); my $IS_A = Bio::Ontology::RelationshipType->get_instance("IS_A", $ont); my $PART_OF = Bio::Ontology::RelationshipType->get_instance("PART_OF", $ont); my $CONTAINS = Bio::Ontology::RelationshipType->get_instance("CONTAINS", $ont); my $FOUND_IN = Bio::Ontology::RelationshipType->get_instance("FOUND_IN", $ont); my $IS_A2 = Bio::Ontology::RelationshipType->get_instance("IS_A", $ont); isa_ok($IS_A, "Bio::Ontology::RelationshipType"); isa_ok($IS_A, "Bio::Ontology::TermI"); ok( ! $IS_A->equals( $PART_OF ) ); ok( $IS_A->equals( $IS_A2 ) ); ok( $PART_OF->equals( $PART_OF ) ); is( $IS_A->identifier(), undef ); # don't make up identifiers is( $IS_A->name(), "IS_A" ); is( $IS_A->definition(), "IS_A relationship predicate (type)" ); is( $IS_A->ontology()->name(), "relationship type" ); is( $PART_OF->identifier(), undef ); # don't make up identifiers is( $PART_OF->name(), "PART_OF" ); is( $PART_OF->definition(), "PART_OF relationship predicate (type)" ); is( $PART_OF->ontology()->name(), "relationship type" ); is( $CONTAINS->identifier(), undef ); # don't make up identifiers is( $CONTAINS->name(), "CONTAINS" ); is( $CONTAINS->definition(), "CONTAINS relationship predicate (type)" ); is( $CONTAINS->ontology()->name(), "relationship type" ); is( $FOUND_IN->identifier(), undef ); # don't make up identifiers is( $FOUND_IN->name(), "FOUND_IN" ); is( $FOUND_IN->definition(), "FOUND_IN relationship predicate (type)" ); is( $FOUND_IN->ontology()->name(), "relationship type" );