Index of /src/CJFIELDS/BioPerl-1.6.1/t/data

Icon  Name                             Last modified      Size  
[DIR] Parent Directory - [   ] 13-pilE-F.scf 29-Sep-2009 10:36 183K [   ] 1A11.pdb 29-Sep-2009 10:36 319K [   ] 1A3I.pdb 29-Sep-2009 10:36 36K [   ] 1BPT.pdb 29-Sep-2009 10:36 48K [   ] 1ZZ19XR301R-Alignment.tblastn 29-Sep-2009 10:36 1.9M [   ] 2008.blasttable 29-Sep-2009 10:36 670 [   ] 503384.MEGABLAST.0 29-Sep-2009 10:36 1.0K [   ] 503384.MEGABLAST.2 29-Sep-2009 10:36 33K [   ] 5X_1895.FASTXY 29-Sep-2009 10:36 75K [   ] 8HVP.pdb 29-Sep-2009 10:36 147K [   ] AAC12660.fa 29-Sep-2009 10:36 561 [   ] AB077698.gb 29-Sep-2009 10:36 7.3K [   ] AE003528_ecoli.bls 29-Sep-2009 10:36 7.9K [   ] AE003644_Adh-genomic.gb 29-Sep-2009 10:36 355K [   ] AF032047.gbk 29-Sep-2009 10:36 2.5K [   ] AF165282.gb 29-Sep-2009 10:36 3.0K [   ] AF305198.gb 29-Sep-2009 10:36 3.7K [   ] AHCYL1.kegg 29-Sep-2009 10:36 3.7K [   ] ATF14F8.gbk 29-Sep-2009 10:36 176K [   ] AY095303S1.gbk 29-Sep-2009 10:36 7.0K [   ] AY763288.gb 29-Sep-2009 10:36 3.3K [   ] AnnIX-v003.gbk 29-Sep-2009 10:36 24K [   ] BAB68554.gb 29-Sep-2009 10:36 1.8K [   ] BC000007.gbk 29-Sep-2009 10:36 6.9K [   ] BEL16-LTR_AG.embl 29-Sep-2009 10:36 1.4K [   ] BK000016-tpa.gbk 29-Sep-2009 10:36 3.9K [   ] BLOSUM50 29-Sep-2009 10:36 2.1K [   ] BN000066-tpa.embl 29-Sep-2009 10:36 15K [   ] BOSS_DROME.FASTP_v35_04 29-Sep-2009 10:36 5.9K [   ] Bird_Ovomucoids.nex 29-Sep-2009 10:36 15K [   ] CG11099.fasaln 29-Sep-2009 10:36 7.9K [   ] CG2865.fasaln 29-Sep-2009 10:36 7.8K [   ] D10483.gbk 29-Sep-2009 10:36 247K [   ] D12555.gbk 29-Sep-2009 10:36 1.9K [   ] DQ018368.gb 29-Sep-2009 10:36 2.9K [   ] ECAPAH02.embl 29-Sep-2009 10:36 241K [   ] ENr111.mfa.example.elems 29-Sep-2009 10:36 543 [   ] GO.defs.test 29-Sep-2009 10:36 1.6K [   ] GO.defs.test2 29-Sep-2009 10:36 944 [   ] Genscan.FastA 29-Sep-2009 10:36 1.1K [   ] Glimmer2.out 29-Sep-2009 10:36 22K [   ] Glimmer3.detail 29-Sep-2009 10:36 13K [   ] Glimmer3.predict 29-Sep-2009 10:36 1.1K [   ] GlimmerHMM.out 29-Sep-2009 10:36 11K [   ] GlimmerM.out 29-Sep-2009 10:36 2.0K [   ] HUMBETGLOA.FASTA 29-Sep-2009 10:36 141K [   ] HUMBETGLOA.fa 29-Sep-2009 10:36 3.0K [   ] HUMBETGLOA.gff 29-Sep-2009 10:36 380 [   ] HUMBETGLOA.grail 29-Sep-2009 10:36 4.9K [   ] HUMBETGLOA.grailexp 29-Sep-2009 10:36 2.0K [   ] HUMBETGLOA.mzef 29-Sep-2009 10:36 429 [   ] HUMBETGLOA.tblastx 29-Sep-2009 10:36 11K [   ] Kingdoms_DNA.nex 29-Sep-2009 10:36 100K [   ] L77119.hmmer 29-Sep-2009 10:36 2.4K [   ] LOAD_Ccd1.dnd 29-Sep-2009 10:36 809 [TXT] LittleChrY.dbsnp.xml 29-Sep-2009 10:36 16K [   ] M0.mlc 29-Sep-2009 10:36 6.4K [   ] M12730.gb 29-Sep-2009 10:36 6.5K [   ] MSGEFTUA.gb 29-Sep-2009 10:36 5.2K [   ] Mcjanrna_rdbII.gbk 29-Sep-2009 10:36 3.0K [   ] MmCT 29-Sep-2009 10:36 3.8K [   ] NC_001284.gbk 29-Sep-2009 10:36 590K [   ] NC_006346.gb 29-Sep-2009 10:36 2.8K [   ] NC_006511-short.gbk 29-Sep-2009 10:36 6.2K [   ] NC_008536.gb 29-Sep-2009 10:36 11K [   ] NM_002254.gb 29-Sep-2009 10:36 10K [   ] NT_021877.gbk 29-Sep-2009 10:36 16K [   ] O_sat.wgs 29-Sep-2009 10:36 6.0K [   ] P33897 29-Sep-2009 10:36 28K [   ] P35527.gb 29-Sep-2009 10:36 14K [   ] P39765.gb 29-Sep-2009 10:36 19K [   ] PAM250 29-Sep-2009 10:36 2.0K [   ] Primate_mtDNA.nex 29-Sep-2009 10:36 31K [   ] Q8GBD3.swiss 29-Sep-2009 10:36 2.1K [   ] Rab1.chaos-xml 29-Sep-2009 10:36 20K [   ] SPAN_Family4nl.nex 29-Sep-2009 10:36 31K [   ] SPAN_Family7n.nex 29-Sep-2009 10:36 111K [   ] SPAN_Family8a.nex 29-Sep-2009 10:36 10K [   ] SwissProt.dat 29-Sep-2009 10:36 2.0K [   ] T7.aln 29-Sep-2009 10:36 21K [   ] Treebase-chlamy-dna.nex 29-Sep-2009 10:36 14K [   ] U58726.gb 29-Sep-2009 10:36 54K [   ] U71225.gb 29-Sep-2009 10:36 3.1K [   ] U83300.bsml 29-Sep-2009 10:36 4.2K [   ] UnaSmithHIV-both.nex 29-Sep-2009 10:36 93K [   ] X98338_Adh-mRNA.gb 29-Sep-2009 10:36 5.6K [   ] a_thaliana.blastn 29-Sep-2009 10:36 15K [   ] aaml.mlc 29-Sep-2009 10:36 3.6K [   ] aaml_pairwise.mlc 29-Sep-2009 10:36 3.2K [   ] acefile.ace.1 29-Sep-2009 10:36 334K [   ] acefile.singlets 29-Sep-2009 10:36 66K [   ] adh.mb_tree.nexus 29-Sep-2009 10:36 17K [   ] alleles.fas 29-Sep-2009 10:36 174 [   ] alnfile.fasta 29-Sep-2009 10:36 294 [   ] amino.fa 29-Sep-2009 10:36 446 [   ] ar.embl 29-Sep-2009 10:36 7.5K [   ] assembly_with_singlets.ace 29-Sep-2009 10:36 28K [   ] atp1.matrix 29-Sep-2009 10:36 81K [   ] ay007676.gb 29-Sep-2009 10:36 3.4K [   ] ay116458.gb 29-Sep-2009 10:36 2.3K [   ] ay149291.gb 29-Sep-2009 10:36 2.2K [   ] barns-combined.nex 29-Sep-2009 10:36 63K [   ] baseml.pairwise 29-Sep-2009 10:36 929 [   ] baseml.usertree 29-Sep-2009 10:36 1.2K [   ] basic-bush.nex 29-Sep-2009 10:36 448 [   ] basic-ladder.nex 29-Sep-2009 10:36 438 [DIR] biodbgff/ 29-Sep-2009 10:36 - [   ] biofpc.cor 29-Sep-2009 10:36 19K [   ] biofpc.fpc 29-Sep-2009 10:36 76K [   ] bl2seq.blastn 29-Sep-2009 10:36 1.5K [   ] bl2seq.blastn.rev 29-Sep-2009 10:36 1.2K [   ] bl2seq.blastx.out 29-Sep-2009 10:36 2.8K [   ] bl2seq.bug940.out 29-Sep-2009 10:36 6.2K [   ] bl2seq.out 29-Sep-2009 10:36 2.2K [   ] bl2seq.tblastx.out 29-Sep-2009 10:36 13K [   ] blast.report 29-Sep-2009 10:36 22K [TXT] blast_no_hit_desc.txt 29-Sep-2009 10:36 1.3K [   ] blastp2215.blast 29-Sep-2009 10:36 6.9K [   ] blat.psLayout3 29-Sep-2009 10:36 637 [   ] blosum62.bla 29-Sep-2009 10:36 2.0K [   ] bootstrap.tre 29-Sep-2009 10:36 32 [   ] branchSite.mlc 29-Sep-2009 10:36 5.4K [   ] brassica_ATH.WUBLASTN 29-Sep-2009 10:36 8.7K [   ] bug1986.blast2 29-Sep-2009 10:36 47K [   ] bug1986.blastp 29-Sep-2009 10:36 4.9K [   ] bug2120.phd 29-Sep-2009 10:36 14K [   ] bug2246.blast 29-Sep-2009 10:36 1.8K [   ] bug2391.megablast 29-Sep-2009 10:36 1.2K [   ] bug2399.tblastn 29-Sep-2009 10:36 41K [   ] bug2453.maf 29-Sep-2009 10:36 1.1K [   ] bug2473.fasta 29-Sep-2009 10:36 2.2K [   ] bug2862.pmr 29-Sep-2009 10:36 11K [   ] c200-vs-yeast.BLASTN 29-Sep-2009 10:36 21K [   ] c200-vs-yeast.BLASTN.m8 29-Sep-2009 10:36 732 [   ] calm.swiss 29-Sep-2009 10:36 12K [   ] catalase-webblast.BLASTP 29-Sep-2009 10:36 21K [   ] cds-266.fas 29-Sep-2009 10:36 15K [   ] cds_sample.embl 29-Sep-2009 10:36 1.5K [   ] chad100.scf 29-Sep-2009 10:36 79K [   ] char-interleave.nex 29-Sep-2009 10:36 548 [   ] char-matrix-spaces.nex 29-Sep-2009 10:36 496 [   ] codeml.mlc 29-Sep-2009 10:36 13K [   ] codeml315.mlc 29-Sep-2009 10:36 5.9K [   ] codeml4.mlc 29-Sep-2009 10:36 20K [DIR] codeml_lysozyme/ 29-Sep-2009 10:36 - [   ] codeml_nssites.mlc 29-Sep-2009 10:36 22K [   ] compLD_missingtest.prettybase 29-Sep-2009 10:36 851 [   ] compLD_test.prettybase 29-Sep-2009 10:36 302 [   ] component.ontology.test 29-Sep-2009 10:36 2.5K [   ] component.ontology.test2 29-Sep-2009 10:36 442 [DIR] consed_project/ 29-Sep-2009 10:36 - [   ] contig-by-hand.wublastp 29-Sep-2009 10:36 5.4K [   ] contigspectrumtest.asm 29-Sep-2009 10:36 3.4K [   ] crab.dat.cn 29-Sep-2009 10:36 959 [   ] crab.nj 29-Sep-2009 10:36 908 [   ] crab.njb 29-Sep-2009 10:36 1.1K [   ] crypto.sim4-0 29-Sep-2009 10:36 117 [   ] crypto.sim4-3 29-Sep-2009 10:36 930 [   ] crypto.sim4-4 29-Sep-2009 10:36 1.1K [   ] ctgdemo.fpc 29-Sep-2009 10:36 181K [   ] cys1_dicdi.water 29-Sep-2009 10:36 5.8K [   ] cysprot.fa 29-Sep-2009 10:36 2.5K [   ] cysprot.msf 29-Sep-2009 10:36 4.4K [   ] cysprot.needle 29-Sep-2009 10:36 2.1K [   ] cysprot.tblastn 29-Sep-2009 10:36 23K [   ] cysprot.water 29-Sep-2009 10:36 2.1K [   ] cysprot1.FASTA 29-Sep-2009 10:36 14K [   ] cysprot1.fa 29-Sep-2009 10:36 360 [   ] cysprot1a.fa 29-Sep-2009 10:36 1.1K [   ] cysprot1a.msf 29-Sep-2009 10:36 1.9K [   ] cysprot1b.fa 29-Sep-2009 10:36 1.4K [   ] cysprot1b.hmmsearch 29-Sep-2009 10:36 8.4K [   ] cysprot1b.msf 29-Sep-2009 10:36 2.4K [   ] cysprot1b.newick 29-Sep-2009 10:36 93 [   ] cysprot_vs_gadfly.FASTA 29-Sep-2009 10:36 42K [DIR] dbfa/ 29-Sep-2009 10:36 - [DIR] dbqual/ 29-Sep-2009 10:36 - [   ] dcr1_sp.WUBLASTP 29-Sep-2009 10:36 122K [   ] directives.gff3 29-Sep-2009 10:36 126 [   ] dmel_2Lchunk.gb 29-Sep-2009 10:36 29K [   ] dna1.fa 29-Sep-2009 10:36 220 [   ] dna2.fa 29-Sep-2009 10:36 581 [   ] dnaE-bsub-prot.fa 29-Sep-2009 10:36 650 [   ] dnaE-bsub.fa 29-Sep-2009 10:36 2.1K [   ] dnaEbsub_ecoli.wublastx 29-Sep-2009 10:36 6.0K [   ] dnaEbsub_ecoli.wutblastn 29-Sep-2009 10:36 4.3K [   ] dnaEbsub_ecoli.wutblastx 29-Sep-2009 10:36 8.3K [   ] dq519393.gb 29-Sep-2009 10:36 2.3K [   ] echofilter.wublastn 29-Sep-2009 10:36 14K [   ] ecoli-trna-qrna.out 29-Sep-2009 10:36 26K [TXT] ecoli_domains.rps.xml 29-Sep-2009 10:36 34K [   ] ecoli_domains.rpsblast 29-Sep-2009 10:36 5.7K [   ] ecolitst.bls 29-Sep-2009 10:36 11K [   ] ecolitst.fa 29-Sep-2009 10:36 932 [   ] ecolitst.noseqs.wublastp 29-Sep-2009 10:36 3.1K [   ] ecolitst.wublastp 29-Sep-2009 10:36 13K [   ] empty.bl2seq 29-Sep-2009 10:36 645 [   ] entrezgene.dat 29-Sep-2009 10:36 726K [DIR] eutils/ 29-Sep-2009 10:36 - [   ] example.hap 29-Sep-2009 10:36 16K [   ] example.phase 29-Sep-2009 10:36 111 [   ] exonerate.output.dontwork 29-Sep-2009 10:36 3.2K [   ] exonerate.output.works 29-Sep-2009 10:36 5.9K [   ] expected.blast.out 29-Sep-2009 10:36 1.8K [   ] exsignalp.out 29-Sep-2009 10:36 6.3K [   ] factor7.embl 29-Sep-2009 10:36 21K [DIR] fastq/ 29-Sep-2009 10:36 - [   ] fgenesh.out 29-Sep-2009 10:36 3.6K [   ] footprinter.out 29-Sep-2009 10:36 14K [   ] frac_problems.blast 29-Sep-2009 10:36 21K [   ] frac_problems2.blast 29-Sep-2009 10:36 11K [   ] frac_problems3.blast 29-Sep-2009 10:36 6.4K [   ] geneid_1.0.out 29-Sep-2009 10:36 1.8K [   ] genemark-fragment.out 29-Sep-2009 10:36 518 [   ] genemark.out 29-Sep-2009 10:36 6.6K [   ] genewise.out 29-Sep-2009 10:36 16K [   ] genewise_output.paracel_btk 29-Sep-2009 10:36 5.1K [   ] genomewise.out 29-Sep-2009 10:36 333 [   ] genomic-seq.epcr 29-Sep-2009 10:36 571 [   ] genomic-seq.fasta 29-Sep-2009 10:36 168K [   ] genomic-seq.genscan 29-Sep-2009 10:36 12K [   ] genomic-seq.mzef 29-Sep-2009 10:36 1.7K [   ] gf-s71.needle 29-Sep-2009 10:36 2.8K [   ] glimmer3-fragment.detail 29-Sep-2009 10:36 4.3K [   ] glimmer3-fragment.predict 29-Sep-2009 10:36 285 [TXT] gmap_f9-multiple_results.txt 29-Sep-2009 10:36 2.7M [TXT] gmap_f9-reverse-strand.txt 29-Sep-2009 10:36 176K [TXT] gmap_f9.txt 29-Sep-2009 10:36 173K [   ] headerless.psl 29-Sep-2009 10:36 435 [   ] hemoglobinA.meg 29-Sep-2009 10:36 1.4K [   ] hg16_chroms.gff 29-Sep-2009 10:36 1.5K [   ] hmmpfam.out 29-Sep-2009 10:36 1.9K [   ] hmmpfam_cs.out 29-Sep-2009 10:36 28K [   ] hmmpfam_fake.out 29-Sep-2009 10:36 2.6K [   ] hmmsearch.out 29-Sep-2009 10:36 149K [   ] hs_est.est2genome 29-Sep-2009 10:36 970 [   ] hs_fugu.newick 29-Sep-2009 10:36 58 [   ] hs_owlmonkey.aln 29-Sep-2009 10:36 821 [   ] hs_owlmonkey.fas 29-Sep-2009 10:36 387 [   ] hs_owlmonkey.fasta 29-Sep-2009 10:36 416 [   ] hsinsulin.blastcl3.blastn 29-Sep-2009 10:36 19K [   ] humor.maf 29-Sep-2009 10:36 33K [   ] humts1.pal 29-Sep-2009 10:36 2.0K [   ] hybrid1.gff3 29-Sep-2009 10:36 533 [   ] hybrid2.gff3 29-Sep-2009 10:36 525 [   ] in.fasta 29-Sep-2009 10:36 2.0K [   ] insulin.water 29-Sep-2009 10:36 1.4K [TXT] interpro_ebi.xml 29-Sep-2009 10:36 1.6K [TXT] interpro_short.xml 29-Sep-2009 10:36 33K [   ] intrablock-comment.nex 29-Sep-2009 10:36 547 [   ] knownGene.gff3 29-Sep-2009 10:36 1.4K [   ] little.largemultifasta 29-Sep-2009 10:36 1.1K [   ] long-names.nex 29-Sep-2009 10:36 615 [   ] longnames.aln 29-Sep-2009 10:36 8.3K [   ] longnames.dnd 29-Sep-2009 10:36 405 [   ] lucy.info 29-Sep-2009 10:36 65 [   ] lucy.qual 29-Sep-2009 10:36 2.7K [   ] lucy.seq 29-Sep-2009 10:36 1.1K [   ] lucy.stderr 29-Sep-2009 10:36 64 [   ] lysozyme6.protml 29-Sep-2009 10:36 8.7K [   ] lysozyme6.simple.protml 29-Sep-2009 10:36 296 [DIR] map_hem/ 29-Sep-2009 10:36 - 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