BLASTN 2.2.1 [Apr-13-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1012577175-3730-28291 Query= (60 letters) Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS, or phase 0, 1 or 2 HTGS sequences) 1,083,200 sequences; 4,677,375,331 total letters Score E Sequences producing significant alignments: (bits) Value gb|AY052359.1| Arabidopsis thaliana At2g17400 mRNA, complete cds 96 3e-18 gb|AC002329.2|AC002329 Arabidopsis thaliana chromosome II sectio... 96 3e-18 gb|AF132318.1|AF132318 Buchnera aphidicola phosphoribosyl anthra... 42 0.040 gb|AC024791.1| Caenorhabditis elegans cosmid Y47G6A, complete se... 36 2.5 gb|AC017078.8| Homo sapiens BAC clone RP11-457N9 from 2, complet... 36 2.5 gb|AC005046.3|AC005046 Homo sapiens BAC clone CTB-13F3 from 7q22... 36 2.5 gb|AC006017.2|AC006017 Homo sapiens PAC clone RP5-981O7 from 7q3... 36 2.5 dbj|AP001519.1|AP001519 Bacillus halodurans genomic DNA, section... 36 2.5 gb|AC095064.3| Homo sapiens chromosome 4 clone RP11-620C21, comp... 34 9.7 gb|AC003029.3| Homo sapiens Chromosome 12q24 PAC RP3-462E2 (Rosw... 34 9.7 gb|AC079248.5| Homo sapiens BAC clone RP11-24J11 from 2, complet... 34 9.7 gb|AC093865.2| Homo sapiens chromosome 2 clone RP11-560C24, comp... 34 9.7 gb|AC010202.6|AC010202 Homo sapiens 12q BAC RP11-210L7 (Roswell ... 34 9.7 gb|AC017118.3|AC017118 Genomic sequence for Arabidopsis thaliana... 34 9.7 emb|AL355520.8|AL355520 Human DNA sequence from clone RP4-595C2 ... 34 9.7 emb|AL137879.15|AL137879 Human DNA sequence from clone RP11-153O... 34 9.7 gb|AC006395.1|AC006395 Homo sapiens PAC clone RP3-394H4 from Xq2... 34 9.7 gb|AE000650.1|AE000650 Helicobacter pylori 26695 section 128 of ... 34 9.7 gb|AC006924.3|AC006924 Homo sapiens, clone hRPK.32_A_1, complete... 34 9.7 gb|AC006266.1|AC006266 Arabidopsis thaliana BAC F1K3 from chromo... 34 9.7 gb|U32797.1|U32797 Haemophilus influenzae Rd section 112 of 163 ... 34 9.7 emb|AJ286341.1|HIM286341 Human immunodeficiency virus type 1 pro... 34 9.7 emb|AL161561.2|ATCHRIV61 Arabidopsis thaliana DNA chromosome 4, ... 34 9.7 emb|AL161508.2|ATCHRIV20 Arabidopsis thaliana DNA chromosome 4, ... 34 9.7 emb|AL035356.1|ATF22K18 Arabidopsis thaliana DNA chromosome 4, B... 34 9.7 emb|AJ132676.1|MMU132676 Mus musculus IgVk gh33r pseudogene 34 9.7 emb|AJ132673.1|MMU132673 Mus musculus IgVk gd33r pseudogene 34 9.7 emb|AJ132672.1|MMU132672 Mus musculus IgVk gc33r pseudogene 34 9.7 emb|Z74955.1|SCYOR047C S.cerevisiae chromosome XV reading frame ... 34 9.7 emb|Z74954.1|SCYOR046C S.cerevisiae chromosome XV reading frame ... 34 9.7 gb|U28135.1|SCU28135 Saccharomyces cerevisiae DEAD-Box Protein 5... 34 9.7 ALIGNMENTS >gb|AY052359.1| Arabidopsis thaliana At2g17400 mRNA, complete cds Length = 2826 Score = 95.6 bits (48), Expect = 3e-18 Identities = 58/60 (96%), Gaps = 1/60 (1%) Strand = Plus / Plus Query: 1 aggaatgctgtttaattggaatcgtacaatggagaatttgacggaaatagaatcaacgat 60 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 154 aggaatgctgtttaattggaatca-acaatggagaatttgacggaaatagaatcaacgat 212 >gb|AC002329.2|AC002329 Arabidopsis thaliana chromosome II section 100 of 255 of the complete sequence. Sequence from clones T23A1, F5J6, MJB20 Length = 76170 Score = 95.6 bits (48), Expect = 3e-18 Identities = 58/60 (96%), Gaps = 1/60 (1%) Strand = Plus / Plus Query: 1 aggaatgctgtttaattggaatcgtacaatggagaatttgacggaaatagaatcaacgat 60 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 60659 aggaatgctgtttaattggaatca-acaatggagaatttgacggaaatagaatcaacgat 60717 >gb|AF132318.1|AF132318 Buchnera aphidicola phosphoribosyl anthranilate transferase (trpD), phosphoribosyl anthranilate isomerase/indoleglycerol phosphate synthetase fusion (trpC/F), beta subunit of tryptophan synthetase (trpB), and alpha subunit of tryptophan synthetase (trp> Length = 5383 Score = 42.1 bits (21), Expect = 0.040 Identities = 21/21 (100%) Strand = Plus / Plus Query: 35 aatttgacggaaatagaatca 55 ||||||||||||||||||||| Sbjct: 536 aatttgacggaaatagaatca 556 >gb|AC024791.1| Caenorhabditis elegans cosmid Y47G6A, complete sequence Length = 194322 Score = 36.2 bits (18), Expect = 2.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 34 gaatttgacggaaataga 51 |||||||||||||||||| Sbjct: 193876 gaatttgacggaaataga 193859 >gb|AC017078.8| Homo sapiens BAC clone RP11-457N9 from 2, complete sequence Length = 193979 Score = 36.2 bits (18), Expect = 2.5 Identities = 24/26 (92%) Strand = Plus / Plus Query: 3 gaatgctgtttaattggaatcgtaca 28 ||||| ||||||| |||||||||||| Sbjct: 142900 gaatgttgtttaaatggaatcgtaca 142925 >gb|AC005046.3|AC005046 Homo sapiens BAC clone CTB-13F3 from 7q22, complete sequence Length = 219436 Score = 36.2 bits (18), Expect = 2.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 13 taattggaatcgtacaat 30 |||||||||||||||||| Sbjct: 46649 taattggaatcgtacaat 46666 >gb|AC006017.2|AC006017 Homo sapiens PAC clone RP5-981O7 from 7q34-q36, complete sequence Length = 162556 Score = 36.2 bits (18), Expect = 2.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 taattggaatcgtacaat 30 |||||||||||||||||| Sbjct: 114940 taattggaatcgtacaat 114923 >dbj|AP001519.1|AP001519 Bacillus halodurans genomic DNA, section 13/14 Length = 303650 Score = 36.2 bits (18), Expect = 2.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 30 tggagaatttgacggaaa 47 |||||||||||||||||| Sbjct: 28875 tggagaatttgacggaaa 28858 >gb|AC095064.3| Homo sapiens chromosome 4 clone RP11-620C21, complete sequence Length = 87943 Score = 34.2 bits (17), Expect = 9.7 Identities = 17/17 (100%) Strand = Plus / Plus Query: 12 ttaattggaatcgtaca 28 ||||||||||||||||| Sbjct: 42346 ttaattggaatcgtaca 42362 >gb|AC003029.3| Homo sapiens Chromosome 12q24 PAC RP3-462E2 (Roswell Park Cancer Institute Human PAC library) complete sequence Length = 137830 Score = 34.2 bits (17), Expect = 9.7 Identities = 17/17 (100%) Strand = Plus / Plus Query: 24 gtacaatggagaatttg 40 ||||||||||||||||| Sbjct: 71491 gtacaatggagaatttg 71507 >gb|AC079248.5| Homo sapiens BAC clone RP11-24J11 from 2, complete sequence Length = 128535 Score = 34.2 bits (17), Expect = 9.7 Identities = 17/17 (100%) Strand = Plus / Minus Query: 6 tgctgtttaattggaat 22 ||||||||||||||||| Sbjct: 111999 tgctgtttaattggaat 111983 >gb|AC093865.2| Homo sapiens chromosome 2 clone RP11-560C24, complete sequence Length = 186218 Score = 34.2 bits (17), Expect = 9.7 Identities = 17/17 (100%) Strand = Plus / Plus Query: 5 atgctgtttaattggaa 21 ||||||||||||||||| Sbjct: 113514 atgctgtttaattggaa 113530 >gb|AC010202.6|AC010202 Homo sapiens 12q BAC RP11-210L7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 170004 Score = 34.2 bits (17), Expect = 9.7 Identities = 17/17 (100%) Strand = Plus / Plus Query: 4 aatgctgtttaattgga 20 ||||||||||||||||| Sbjct: 95294 aatgctgtttaattgga 95310 >gb|AC017118.3|AC017118 Genomic sequence for Arabidopsis thaliana BAC F6N18 from chromosome I, complete sequence Length = 92219 Score = 34.2 bits (17), Expect = 9.7 Identities = 17/17 (100%) Strand = Plus / Plus Query: 14 aattggaatcgtacaat 30 ||||||||||||||||| Sbjct: 84400 aattggaatcgtacaat 84416 >emb|AL355520.8|AL355520 Human DNA sequence from clone RP4-595C2 on chromosome 1q24.1-25.3 Contains ESTs, STSs and GSSs. Contains the 3' part of the gene for two isoforms of the KIAA0351 protein and the gene for angiopoietin Y1, complete sequence [Homo sapiens] Length = 157575 Score = 34.2 bits (17), Expect = 9.7 Identities = 17/17 (100%) Strand = Plus / Plus Query: 5 atgctgtttaattggaa 21 ||||||||||||||||| Sbjct: 80465 atgctgtttaattggaa 80481 >emb|AL137879.15|AL137879 Human DNA sequence from clone RP11-153O23 on chromosome 13, complete sequence [Homo sapiens] Length = 85149 Score = 34.2 bits (17), Expect = 9.7 Identities = 17/17 (100%) Strand = Plus / Plus Query: 25 tacaatggagaatttga 41 ||||||||||||||||| Sbjct: 41783 tacaatggagaatttga 41799 >gb|AC006395.1|AC006395 Homo sapiens PAC clone RP3-394H4 from Xq23, complete sequence Length = 72291 Score = 34.2 bits (17), Expect = 9.7 Identities = 17/17 (100%) Strand = Plus / Plus Query: 1 aggaatgctgtttaatt 17 ||||||||||||||||| Sbjct: 40047 aggaatgctgtttaatt 40063 >gb|AE000650.1|AE000650 Helicobacter pylori 26695 section 128 of 134 of the complete genome Length = 11043 Score = 34.2 bits (17), Expect = 9.7 Identities = 17/17 (100%) Strand = Plus / Minus Query: 36 atttgacggaaatagaa 52 ||||||||||||||||| Sbjct: 1772 atttgacggaaatagaa 1756 >gb|AC006924.3|AC006924 Homo sapiens, clone hRPK.32_A_1, complete sequence Length = 165633 Score = 34.2 bits (17), Expect = 9.7 Identities = 17/17 (100%) Strand = Plus / Minus Query: 4 aatgctgtttaattgga 20 ||||||||||||||||| Sbjct: 11360 aatgctgtttaattgga 11344 >gb|AC006266.1|AC006266 Arabidopsis thaliana BAC F1K3 from chromosome IV near 21 cM, complete sequence Length = 105680 Score = 34.2 bits (17), Expect = 9.7 Identities = 20/21 (95%) Strand = Plus / Minus Query: 20 aatcgtacaatggagaatttg 40 ||||||||||||||| ||||| Sbjct: 52077 aatcgtacaatggagtatttg 52057 >gb|U32797.1|U32797 Haemophilus influenzae Rd section 112 of 163 of the complete genome Length = 10274 Score = 34.2 bits (17), Expect = 9.7 Identities = 17/17 (100%) Strand = Plus / Minus Query: 26 acaatggagaatttgac 42 ||||||||||||||||| Sbjct: 2447 acaatggagaatttgac 2431 >emb|AJ286341.1|HIM286341 Human immunodeficiency virus type 1 proviral env gene for gp160, genomic RNA, isolate M2424/4, clone 1 Length = 2586 Score = 34.2 bits (17), Expect = 9.7 Identities = 20/21 (95%) Strand = Plus / Plus Query: 7 gctgtttaattggaatcgtac 27 |||||||||||||||| |||| Sbjct: 1176 gctgtttaattggaatagtac 1196 >emb|AL161561.2|ATCHRIV61 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 61 Length = 198402 Score = 34.2 bits (17), Expect = 9.7 Identities = 17/17 (100%) Strand = Plus / Plus Query: 44 gaaatagaatcaacgat 60 ||||||||||||||||| Sbjct: 146009 gaaatagaatcaacgat 146025 >emb|AL161508.2|ATCHRIV20 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 20 Length = 196517 Score = 34.2 bits (17), Expect = 9.7 Identities = 20/21 (95%) Strand = Plus / Minus Query: 20 aatcgtacaatggagaatttg 40 ||||||||||||||| ||||| Sbjct: 180658 aatcgtacaatggagtatttg 180638 >emb|AL035356.1|ATF22K18 Arabidopsis thaliana DNA chromosome 4, BAC clone F22K18 (ESSAII project) Length = 125803 Score = 34.2 bits (17), Expect = 9.7 Identities = 17/17 (100%) Strand = Plus / Minus Query: 44 gaaatagaatcaacgat 60 ||||||||||||||||| Sbjct: 102901 gaaatagaatcaacgat 102885 >emb|AJ132676.1|MMU132676 Mus musculus IgVk gh33r pseudogene Length = 737 Score = 34.2 bits (17), Expect = 9.7 Identities = 17/17 (100%) Strand = Plus / Minus Query: 13 taattggaatcgtacaa 29 ||||||||||||||||| Sbjct: 317 taattggaatcgtacaa 301 >emb|AJ132673.1|MMU132673 Mus musculus IgVk gd33r pseudogene Length = 813 Score = 34.2 bits (17), Expect = 9.7 Identities = 17/17 (100%) Strand = Plus / Minus Query: 13 taattggaatcgtacaa 29 ||||||||||||||||| Sbjct: 318 taattggaatcgtacaa 302 >emb|AJ132672.1|MMU132672 Mus musculus IgVk gc33r pseudogene Length = 736 Score = 34.2 bits (17), Expect = 9.7 Identities = 17/17 (100%) Strand = Plus / Minus Query: 13 taattggaatcgtacaa 29 ||||||||||||||||| Sbjct: 318 taattggaatcgtacaa 302 >emb|Z74955.1|SCYOR047C S.cerevisiae chromosome XV reading frame ORF YOR047c Length = 3461 Score = 34.2 bits (17), Expect = 9.7 Identities = 17/17 (100%) Strand = Plus / Plus Query: 24 gtacaatggagaatttg 40 ||||||||||||||||| Sbjct: 473 gtacaatggagaatttg 489 >emb|Z74954.1|SCYOR046C S.cerevisiae chromosome XV reading frame ORF YOR046c Length = 2310 Score = 34.2 bits (17), Expect = 9.7 Identities = 17/17 (100%) Strand = Plus / Plus Query: 24 gtacaatggagaatttg 40 ||||||||||||||||| Sbjct: 1605 gtacaatggagaatttg 1621 >gb|U28135.1|SCU28135 Saccharomyces cerevisiae DEAD-Box Protein 5 (DBP5) gene, complete cds Length = 3696 Score = 34.2 bits (17), Expect = 9.7 Identities = 17/17 (100%) Strand = Plus / Minus Query: 24 gtacaatggagaatttg 40 ||||||||||||||||| Sbjct: 1212 gtacaatggagaatttg 1196 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS, or phase 0, 1 or 2 HTGS sequences) Posted date: Jan 31, 2002 11:56 PM Number of letters in database: 382,408,035 Number of sequences in database: 1,083,200 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 117,267 Number of Sequences: 1083200 Number of extensions: 117267 Number of successful extensions: 7699 Number of sequences better than 10.0: 31 length of query: 60 length of database: 4,677,375,331 effective HSP length: 19 effective length of query: 41 effective length of database: 4,656,794,531 effective search space: 190928575771 effective search space used: 190928575771 T: 0 A: 30 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 17 (34.2 bits)