BLASTN 2.2.14 [May-07-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: LTR_STRUC_8x_na 791 sequences; 6,808,925 total letters Searching Query= jgi|Phypa1|75037|fgenesh1_pg.scaffold_51000008 (2511 letters) Score E Sequences producing significant alignments: (bits) Value scaffold_5_1_Scaffolds_seq10928_PT_B1_L1_270_rprt_txt 1356 0.0 >scaffold_5_1_Scaffolds_seq10928_PT_B1_L1_270_rprt_txt Length = 16463 Score = 1356 bits (684), Expect = 0.0 Identities = 684/684 (100%) Strand = Plus / Plus Query: 1088 ctacaatacgaggtacaataggttgggaggatcctgttgaatctctttcagttcatgcat 1147 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8914 ctacaatacgaggtacaataggttgggaggatcctgttgaatctctttcagttcatgcat 8973 Query: 1148 atattgctaagagccaacatgaagctttgatggaagaaaagaaacgaggaaattttgatg 1207 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8974 atattgctaagagccaacatgaagctttgatggaagaaaagaaacgaggaaattttgatg 9033 Query: 1208 atacgagagaaggaaattcttctaagaggcaaactcgaggagacaaggctcgggaggcag 1267 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9034 atacgagagaaggaaattcttctaagaggcaaactcgaggagacaaggctcgggaggcag 9093 Query: 1268 cttcacaagaattgcctctaaaggatacctcaacatcattggaagaaaaaacaagggaga 1327 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9094 cttcacaagaattgcctctaaaggatacctcaacatcattggaagaaaaaacaagggaga 9153 Query: 1328 caaatgataagggcaaatcaattgcttataaactactttctgacattgaagtggcaacaa 1387 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9154 caaatgataagggcaaatcaattgcttataaactactttctgacattgaagtggcaacaa 9213 Query: 1388 atttgaaaggggtgttggaagaacgtatattaaatgctaaggtggaattcacattgaaag 1447 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9214 atttgaaaggggtgttggaagaacgtatattaaatgctaaggtggaattcacattgaaag 9273 Query: 1448 aagttttggaaattgcaaagaaggagtttcatgatgttatcattgacagcattaagcaaa 1507 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9274 aagttttggaaattgcaaagaaggagtttcatgatgttatcattgacagcattaagcaaa 9333 Query: 1508 agagaaaattaatggacaaaactggaatgagtcatactattgatgcaagaatatataaag 1567 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9334 agagaaaattaatggacaaaactggaatgagtcatactattgatgcaagaatatataaag 9393 Query: 1568 atgaagaagaggttgatattggttacaagcaactaaaaaatgaaaagaataggtataatc 1627 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9394 atgaagaagaggttgatattggttacaagcaactaaaaaatgaaaagaataggtataatc 9453 Query: 1628 aacgaatacgttttgaagattatattgataaggaaatggaaaccttgagccattatactc 1687 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9454 aacgaatacgttttgaagattatattgataaggaaatggaaaccttgagccattatactc 9513 Query: 1688 gaaagcattggacaagagcaactaatgaggtattggtgaaagtaggagatatagaagaac 1747 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9514 gaaagcattggacaagagcaactaatgaggtattggtgaaagtaggagatatagaagaac 9573 Query: 1748 caattgttgttttagttgaccatg 1771 |||||||||||||||||||||||| Sbjct: 9574 caattgttgttttagttgaccatg 9597 Score = 1154 bits (582), Expect = 0.0 Identities = 582/582 (100%) Strand = Plus / Plus Query: 1930 ccagattatggaggtacaaaagaggaggtactctctcgagatgaaggtgccattgatgta 1989 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10015 ccagattatggaggtacaaaagaggaggtactctctcgagatgaaggtgccattgatgta 10074 Query: 1990 agttttattggtattttggagaatgaaaatattatgtataagaaagttgatgattttaaa 2049 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10075 agttttattggtattttggagaatgaaaatattatgtataagaaagttgatgattttaaa 10134 Query: 2050 agaaaagaaagaaaaaaaatatatcatattgaaggagaattatgcaagttaggtacattg 2109 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10135 agaaaagaaagaaaaaaaatatatcatattgaaggagaattatgcaagttaggtacattg 10194 Query: 2110 caagatgatgagaggattttaggtgtttatgaagaaaatgggctggaagattcattggaa 2169 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10195 caagatgatgagaggattttaggtgtttatgaagaaaatgggctggaagattcattggaa 10254 Query: 2170 ttgattacatctattcggttagaagataatgataagattgttgagattcattcgaaagaa 2229 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10255 ttgattacatctattcggttagaagataatgataagattgttgagattcattcgaaagaa 10314 Query: 2230 gtttataccatacttgaatcttttcaagcaccagaagtcactatagagacaagatataaa 2289 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10315 gtttataccatacttgaatcttttcaagcaccagaagtcactatagagacaagatataaa 10374 Query: 2290 atggcagataagaagataaagcctgttgccggaccattaccaaaagattctaaggaacaa 2349 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10375 atggcagataagaagataaagcctgttgccggaccattaccaaaagattctaaggaacaa 10434 Query: 2350 atgggagaagaatcaaaagaagcaagtttaagggatccaatgagtattggacatcagttt 2409 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10435 atgggagaagaatcaaaagaagcaagtttaagggatccaatgagtattggacatcagttt 10494 Query: 2410 actaaagagacttttgaagaattgaagattgattctgatggttctttattgccggaagaa 2469 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10495 actaaagagacttttgaagaattgaagattgattctgatggttctttattgccggaagaa 10554 Query: 2470 attacttacttcaaaaagatgttggctaaacaaggtagatag 2511 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 10555 attacttacttcaaaaagatgttggctaaacaaggtagatag 10596 Score = 918 bits (463), Expect = 0.0 Identities = 463/463 (100%) Strand = Plus / Plus Query: 336 ggaatatttcaaggtatttacgataccaaagataagagaccatattacattgattacgga 395 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7931 ggaatatttcaaggtatttacgataccaaagataagagaccatattacattgattacgga 7990 Query: 396 tcgttatggaaattcatgggaggttttttcacatgcattgaaagatgaatatttcttgga 455 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7991 tcgttatggaaattcatgggaggttttttcacatgcattgaaagatgaatatttcttgga 8050 Query: 456 agatgctgatcacattactaagaagttgtttctggaatggattgaacggcctaataagaa 515 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8051 agatgctgatcacattactaagaagttgtttctggaatggattgaacggcctaataagaa 8110 Query: 516 tttacaagcaacagagctactaagggaatttgagaggcagtactctcaattattgaaggt 575 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8111 tttacaagcaacagagctactaagggaatttgagaggcagtactctcaattattgaaggt 8170 Query: 576 agaaaaattgacattggagccgaacaaatttgatctatttcttcaagctgctgatggaga 635 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8171 agaaaaattgacattggagccgaacaaatttgatctatttcttcaagctgctgatggaga 8230 Query: 636 attgcaagggaaattagaattccttcttgaagacaaagaagaaggtgaaggattgacaac 695 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8231 attgcaagggaaattagaattccttcttgaagacaaagaagaaggtgaaggattgacaac 8290 Query: 696 aaagtggaagaacattgaagatgcggtggagttgcttacaaaaagagaaaggaggaaaga 755 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8291 aaagtggaagaacattgaagatgcggtggagttgcttacaaaaagagaaaggaggaaaga 8350 Query: 756 taggagtaatattccgaaaatagtacaagcacccaaagctcca 798 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8351 taggagtaatattccgaaaatagtacaagcacccaaagctcca 8393 Score = 573 bits (289), Expect = e-163 Identities = 289/289 (100%) Strand = Plus / Plus Query: 799 aatgtttcaaaacaaggatatgtacaaagatgcatttggtgtgatgatgctttatacact 858 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8550 aatgtttcaaaacaaggatatgtacaaagatgcatttggtgtgatgatgctttatacact 8609 Query: 859 aggaaagattgcaatgaatttaataatatgatacggcaaggaattatttgctggaaagat 918 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8610 aggaaagattgcaatgaatttaataatatgatacggcaaggaattatttgctggaaagat 8669 Query: 919 ggaaagatagcattaaaagatagggaggatcttcttctaaccaactttgacaagagagga 978 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8670 ggaaagatagcattaaaagatagggaggatcttcttctaaccaactttgacaagagagga 8729 Query: 979 atgagagcattggttcaagattacttaaaagagcatgaaacagcagcacgagaaagtaca 1038 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8730 atgagagcattggttcaagattacttaaaagagcatgaaacagcagcacgagaaagtaca 8789 Query: 1039 agttatggtgctagagtagatgatgaccttagtggaagtacggaaacta 1087 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8790 agttatggtgctagagtagatgatgaccttagtggaagtacggaaacta 8838 Score = 315 bits (159), Expect = 2e-85 Identities = 159/159 (100%) Strand = Plus / Plus Query: 1771 gctaataacacatggggcgaattatatggagctcgtccagatgtcaaaatttggattggg 1830 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9684 gctaataacacatggggcgaattatatggagctcgtccagatgtcaaaatttggattggg 9743 Query: 1831 gatgttgcgacggagcaacatttctttgttcaagatacaacgtcttatccgttgatttta 1890 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9744 gatgttgcgacggagcaacatttctttgttcaagatacaacgtcttatccgttgatttta 9803 Query: 1891 gaacaaccttatattatggcaatacggatggaaacaaaa 1929 ||||||||||||||||||||||||||||||||||||||| Sbjct: 9804 gaacaaccttatattatggcaatacggatggaaacaaaa 9842 Score = 230 bits (116), Expect = 7e-60 Identities = 116/116 (100%) Strand = Plus / Plus Query: 95 acagtcagtggatacaagatcgtgagtataaagcggtatcgaagattagcagattgggtt 154 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7360 acagtcagtggatacaagatcgtgagtataaagcggtatcgaagattagcagattgggtt 7419 Query: 155 gttcgggattctttgtaacgtctagagacctaccggctgaggcaaaaaggattttg 210 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7420 gttcgggattctttgtaacgtctagagacctaccggctgaggcaaaaaggattttg 7475 Score = 186 bits (94), Expect = 1e-46 Identities = 94/94 (100%) Strand = Plus / Plus Query: 1 atggtgtttaattgggcagcttatgtagcaactcgtattcatgcggaaatgggagccaag 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6461 atggtgtttaattgggcagcttatgtagcaactcgtattcatgcggaaatgggagccaag 6520 Query: 61 tgcaaaatagagaagtttacagtgttgtcgtatt 94 |||||||||||||||||||||||||||||||||| Sbjct: 6521 tgcaaaatagagaagtttacagtgttgtcgtatt 6554 Score = 182 bits (92), Expect = 2e-45 Identities = 110/116 (94%) Strand = Plus / Plus Query: 95 acagtcagtggatacaagatcgtgagtataaagcggtatcgaagattagcagattgggtt 154 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 14136 acagtcagtggatacaagatcgtgagtataaagcggtatcgaagattagcagattgggtt 14195 Query: 155 gttcgggattctttgtaacgtctagagacctaccggctgaggcaaaaaggattttg 210 ||||||| |||| ||||| ||||||||||||||| |||| | |||||||||||||| Sbjct: 14196 gttcggggttctctgtaatgtctagagacctaccagctgggacaaaaaggattttg 14251 Score = 139 bits (70), Expect = 2e-32 Identities = 70/70 (100%) Strand = Plus / Plus Query: 210 gagaacgaaaataaaaattttgaaggatctttgggaggagtttctggtggaggttcttct 269 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7717 gagaacgaaaataaaaattttgaaggatctttgggaggagtttctggtggaggttcttct 7776 Query: 270 caaggacaag 279 |||||||||| Sbjct: 7777 caaggacaag 7786 Score = 119 bits (60), Expect = 2e-26 Identities = 60/60 (100%) Strand = Plus / Plus Query: 278 agcaacagcaaagcaatgatcaagaggaagctttggcaaccaaagcattgcaagcagtgg 337 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7844 agcaacagcaaagcaatgatcaagaggaagctttggcaaccaaagcattgcaagcagtgg 7903 Database: LTR_STRUC_8x_na Posted date: Sep 4, 2006 3:29 PM Number of letters in database: 6,808,925 Number of sequences in database: 791 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 791 Number of Hits to DB: 350,368 Number of extensions: 23312 Number of successful extensions: 1851 Number of sequences better than 1.0e-04: 233 Number of HSP's gapped: 1699 Number of HSP's successfully gapped: 1236 Length of query: 2511 Length of database: 6,808,925 Length adjustment: 17 Effective length of query: 2494 Effective length of database: 6,795,478 Effective search space: 16947922132 Effective search space used: 16947922132 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 15 (30.2 bits) S2: 24 (48.1 bits) Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: LTR_STRUC_8x_na 791 sequences; 6,808,925 total letters Searching Query= jgi|Phypa1|96131|fgenesh1_pg.scaffold_296000015 (456 letters) Score E Sequences producing significant alignments: (bits) Value scaffold_5_6_Scaffolds_seq_8392_PT_B8_L9_282_rprt_txt 276 2e-74 >scaffold_5_6_Scaffolds_seq_8392_PT_B8_L9_282_rprt_txt Length = 8149 Score = 276 bits (139), Expect = 2e-74 Identities = 157/163 (96%) Strand = Plus / Minus Query: 1 atgaatatgaaagaccttaatgaaggtacagagattccacagcaaaaagatgaaagtgat 60 ||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||| Sbjct: 1524 atgaatatggaagaccttaatgaaggtacagagattccgcagcaagaagatgaaagtgat 1465 Query: 61 atggataatgaaggtgacgaagacgaactggacaaagacgtaggggatatattcagaatc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 1464 atggataatgaaggtgacgaagacgaactggacaaagacgtaggggatatattctgaatc 1405 Query: 121 aaacagcaattgggtaaattggtgcataccggaggatgcacag 163 ||| ||||||||| ||||||||||||||||||||||||||||| Sbjct: 1404 aaatagcaattggataaattggtgcataccggaggatgcacag 1362 Score = 151 bits (76), Expect = 9e-37 Identities = 100/108 (92%) Strand = Plus / Minus Query: 164 tcgtttatattccagcagtcaaaactgatagactgcttgactatcgacgaatctccatac 223 ||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||| Sbjct: 6919 tcgtttatattccagcagtaaaaactgatagactgcttgactatcggcggatctccatac 6860 Query: 224 taccttctacagctagacgcccgacgcgttctcgagcaggaaagcacg 271 ||||||||| ||| ||| ||||| ||||||||||||||||| |||||| Sbjct: 6859 taccttctagagccagaggcccggcgcgttctcgagcaggagagcacg 6812 Score = 143 bits (72), Expect = 2e-34 Identities = 96/104 (92%) Strand = Plus / Minus Query: 161 cagtcgtttatattccagcagtcaaaactgatagactgcttgactatcgacgaatctcca 220 |||||||||||||| ||||||| |||||||||||||||||||||||||| || ||||||| Sbjct: 120 cagtcgtttatatttcagcagtaaaaactgatagactgcttgactatcggcggatctcca 61 Query: 221 tactaccttctacagctagacgcccgacgcgttctcgagcagga 264 |||||||||||| ||| ||||||||| | ||||||||||||||| Sbjct: 60 tactaccttctagagccagacgcccggctcgttctcgagcagga 17 Score = 60.0 bits (30), Expect = 3e-09 Identities = 42/46 (91%) Strand = Plus / Minus Query: 312 ggagccaattctagatccaagacggaagattgaagaaattcagagg 357 ||||||||||| |||| |||| ||||||||||||||||||||||| Sbjct: 739 ggagccaattccggatctaagatggaagattgaagaaattcagagg 694 Score = 52.0 bits (26), Expect = 6e-07 Identities = 41/46 (89%) Strand = Plus / Minus Query: 312 ggagccaattctagatccaagacggaagattgaagaaattcagagg 357 |||||||||| |||| |||| ||||||||||||||||||||||| Sbjct: 7543 ggagccaatttcggatctaagatggaagattgaagaaattcagagg 7498 Database: LTR_STRUC_8x_na Posted date: Sep 4, 2006 3:29 PM Number of letters in database: 6,808,925 Number of sequences in database: 791 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 791 Number of Hits to DB: 50,062 Number of extensions: 3603 Number of successful extensions: 1243 Number of sequences better than 1.0e-04: 157 Number of HSP's gapped: 985 Number of HSP's successfully gapped: 621 Length of query: 456 Length of database: 6,808,925 Length adjustment: 16 Effective length of query: 440 Effective length of database: 6,796,269 Effective search space: 2990358360 Effective search space used: 2990358360 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits) S2: 23 (46.1 bits)