# -*-Perl-*- Test Harness script for Bioperl # $Id: esearch.t 15112 2008-12-08 18:12:38Z sendu $ # use strict; use warnings; BEGIN { use lib '.'; use Bio::Root::Test; test_begin(-tests => 13, -requires_modules => [qw(URI HTTP::Request)]); use_ok('Bio::Tools::EUtilities::EUtilParameters'); } my @ids = qw(6679096 31543332 134288853 483581 20805941 187951953 169158074 123228044 148676374 114326469 148707003 187952787 123233807 148694865 148694864 148694863 148694861 148694862 8705244 8568086); my %params = (-eutil => 'efetch', -db => 'nucleotide', -id => \@ids, -email => 'me@foo.bar', -retmode => 'xml'); my $pobj = Bio::Tools::EUtilities::EUtilParameters->new(%params); # initial 'primed' state is($pobj->parameters_changed, 1); my $request = $pobj->to_request; # 'exhaust' state isa_ok($request, 'HTTP::Request'); is($request->url, 'http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?'. 'db=nucleotide&retmode=xml&id=6679096%2C31543332%2C134288853%2C483581%2C'. '20805941%2C187951953%2C169158074%2C123228044%2C148676374%2C114326469%2C'. '148707003%2C187952787%2C123233807%2C148694865%2C148694864%2C148694863%2C'. '148694861%2C148694862%2C8705244%2C8568086&tool=BioPerl&email=me%40foo.bar'); is($pobj->to_string(), 'http://eutils.ncbi.nlm.nih.gov/entrez/eutils/'. 'efetch.fcgi?db=nucleotide&retmode=xml&id=6679096%2C31543332%2C134288853%2C'. '483581%2C20805941%2C187951953%2C169158074%2C123228044%2C148676374%2C'. '114326469%2C148707003%2C187952787%2C123233807%2C148694865%2C148694864%2C'. '148694863%2C148694861%2C148694862%2C8705244%2C8568086'. '&tool=BioPerl&email=me%40foo.bar'); is($pobj->parameters_changed, 0); # state won't change if the same parameters are passed $pobj->set_parameters(%params); is($pobj->parameters_changed, 0); $pobj->retmode('xml'); is($pobj->parameters_changed, 0); # reprime state with new value $pobj->retmode('text'); is($pobj->parameters_changed, 1); is(join(',',$pobj->available_parameters('epost')), 'db,retmode,id,tool,email,WebEnv,query_key', 'available_parameters'); is(join(',',$pobj->available_parameters('efetch')), 'db,retmode,id,retmax,retstart,rettype,strand,seq_start,seq_stop,complexity,report,tool,email,WebEnv,query_key', 'available_parameters'); my %data = $pobj->get_parameters; is_deeply($data{id}, $params{-id}, 'get_parameters'); is($data{email}, $params{-email}, 'get_parameters');