LOCUS NC_008536 2001 bp DNA linear BCT 21-JUL-2008 DEFINITION Solibacter usitatus Ellin6076, complete genome. ACCESSION NC_008536 REGION: 1000..3000 VERSION NC_008536.1 GI:116619145 PROJECT GenomeProject:12638 KEYWORDS . SOURCE Solibacter usitatus Ellin6076 ORGANISM Solibacter usitatus Ellin6076 Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Solibacter. REFERENCE 1 (bases 1 to 2001) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Thompson,L.S., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Janssen,P.H., Kuske,C.R. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Solibacter usitatus Ellin6076 JOURNAL Unpublished REFERENCE 2 (bases 1 to 2001) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (24-OCT-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2001) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Thompson,L.S., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Janssen,P.H., Kuske,C.R. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (06-OCT-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000473. URL -- http://www.jgi.doe.gov JGI Project ID: 3634513 Source DNA and bacteria available from Cheryl R. Kuske (kuske@lanl.gov) Contacts: Cheryl R. Kuske (kuske@lanl.gov) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..2001 /organism="Solibacter usitatus Ellin6076" /mol_type="genomic DNA" /strain="Ellin6076" /db_xref="taxon:234267" gene <1..403 /locus_tag="Acid_0001" /db_xref="GeneID:4431688" CDS <1..403 /locus_tag="Acid_0001" /note="KEGG: aba:Acid345_0001 chromosomal replication initiator protein DnaA TIGRFAM: chromosomal replication initiator protein DnaA PFAM: Chromosomal replication initiator, DnaA C-terminal domain; Chromosomal replication initiator, DnaA SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="chromosomal replication initiator protein DnaA" /protein_id="YP_821302.1" /db_xref="GI:116619146" /db_xref="InterPro:IPR001957" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR013159" /db_xref="InterPro:IPR013317" /db_xref="GeneID:4431688" /translation="MNYWDQIRHYLQSKVSADGYDNWLKSTAFVGQNGDTLYVSVPDR ETRAWLETEYTQLIQGGIQALGLPVRHVSFEAEQSRPAAPAATIAVNANTEPDAAATV LNPKFTFNSFVVGACNQFAHAAAKSVATNPSRSYNPLFLYGGVGMGKTHLMHAIGRQL IDQFGSMRIIYTSSERFMNEMISCIRTERMQQFHQRYREADVLLIDDIQLLGNKERTQ EEFFHTFNELHDHQKQIVISSDSPPKDIPGLLERLRSRFEWGLMADIQPPDLETKMAI LDKKAEIEGVELPDDVRTFMASKTKSNVRELEGALVKLIAYSSLTGTPIHLQMAQQVL KHLVHVQDRRVTMDSIQKAVAEKFSIKQSQLKEKSNTKKVVYPRQVAMYLVKELTNAS LPEIGRAFGGKHHTTVIHSINKIEKDRQSDPELNRLLHSLMDSLQ" gene 638..1756 /locus_tag="Acid_0002" /db_xref="GeneID:4431689" CDS 638..1756 /locus_tag="Acid_0002" /EC_number="2.7.7.7" /note="KEGG: aba:Acid345_0002 DNA polymerase III, beta subunit TIGRFAM: DNA polymerase III, beta subunit PFAM: DNA polymerase III, beta chain" /codon_start=1 /transl_table=11 /product="DNA polymerase III, beta subunit" /protein_id="YP_821303.1" /db_xref="GI:116619147" /db_xref="InterPro:IPR001001" /db_xref="GeneID:4431689" /translation="MEFTVSKSDLVRELSLSQGVVEKKTTIPILSNVLLEAADDRITL TATDLELGIRCSCPARVKKEGSGTVPARKLLDYMRLLPEGDVNMKFLDNHWASITSGR SRTRIAGMSRESFPELPQMPEPIAQVPVKTLASMIARTSFAISMEESRFTLNGALLLM RPEGLTMVATDGHRLAYVQAEPAESGSADKPFRALVPKKAMSELTKLSDDAGEGAMAI VAGDDNHLFFQIGHRLLITRKLTGNFPDYERVLPKDHQFMAKLEKGEIRSAIERVAQF ADERSRAIRVQFNSGEVRVFSSSVETGESEESVPAEYTGPDIEIGFNAQYLLDFLRAI SQDHVAFELKDQKSAGELRPAGDAIADQYRYVVMPMRI" gene 1782..>2001 /locus_tag="Acid_0003" /db_xref="GeneID:4431690" CDS 1782..>2001 /locus_tag="Acid_0003" /EC_number="5.99.1.3" /note="KEGG: aba:Acid345_0008 DNA gyrase, B subunit TIGRFAM: DNA gyrase, B subunit PFAM: DNA gyrase, subunit B domain protein; ATP-binding region, ATPase domain protein domain protein; TOPRIM domain protein; DNA topoisomerase, type IIA, subunit B, region 2 domain protein SMART: DNA topoisomerase II" /codon_start=1 /transl_table=11 /product="DNA gyrase subunit B" /protein_id="YP_821304.1" /db_xref="GI:116619148" /db_xref="InterPro:IPR000565" /db_xref="InterPro:IPR001241" /db_xref="InterPro:IPR002288" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR006171" /db_xref="InterPro:IPR011557" /db_xref="InterPro:IPR011558" /db_xref="InterPro:IPR013506" /db_xref="GeneID:4431690" /translation="MPNEVNPVGGNGNVYDSSSIKVLEGLEAVRLRPAMYIGSTGEMG LHHLVYEVVDNSVDEALAGYATHIEVTIHDDNSVTVEDDGRGIPVGIHEEEGVSAAQV VMTKLHAGGKFDSNSYKVSGGLHGVGVSCVNALSEKLELEIWREGYTWTQEYSCGKPK ADLVRAGKAGKRTGTRVTFKPDSTIMEVAVFNYDTLAQRLRELAFLNKGLKITLTDER VDPEKVTPFEYQGGISEFIKHLNRGKSVLHEKPIHFEAEREMPEKGTITMEVALQYND AYSENVFSFANNINTVDGGTHLSGFRSALTRTINAFGQKNGLFKDVKENLSGDDVREG LTAVVSVKVPQPQFEGQTKGKLNSDIAGYMTQFVNDKLSEYFDKNSAVGRKIVGKAIE ASRAREAARKARDLTRRKGALDSGGLPGKLADCQEKDPKLCELFLVEGESAGGTAKQG RERRFQAILPLKGKILNVEKARYDKMLGHEEIRCMITALGTGIGKDDFDVAKLRYDKI IIMTDADVDGSHIRTLLLTFFFRHMNELITRGKVYIAQPPLYRIKKGKSEKYIKDEKE FTKEIMRRATENLTVEIHSNGDGKPKSSLEGQELRTFLLNLDEFQQIFHKVERRLRDS RAVDVLTNVDLHVDNKAEFQVEANLKPVFEAMKAKGLNPQMKKDEEHSAWAVVFHDST GAERSVGLQLAAQPEYRRFRALARTIAKFNEPPFVVVKNEHRDAQPDWVELLEYVKNE GKKDASVQRYKGLGEMNAEQLADTTMNPEKRTLLEVRLEDAVQCEEIFSTLMGEDVES RRKFIEENALDVKNLDV" ORIGIN 1 ccgcgaactc gaaggcgccc tggttaaatt gatcgcgtac tcctccctca ccggaacgcc 61 gatccacctg cagatggcgc aacaggtcct gaagcacctg gtccacgtgc aggaccgccg 121 cgtcaccatg gattccatcc aaaaggccgt cgcggagaaa ttcagcatta agcagtccca 181 gctcaaggaa aagagcaata ccaagaaggt ggtctatccg cggcaggtgg caatgtacct 241 ggtcaaggag ctcaccaacg cgtcgctacc tgagatcggg cgcgctttcg gcggaaagca 301 tcacaccacc gtgatccact cgatcaacaa aatcgagaag gatcgccaga gcgaccctga 361 attgaacagg ttactacaca gcctaatgga ctcattacaa tgaccttcca ccgttttcca 421 caattgccct tgcaccgggc atggggaaat ctgtgtatat cgcatgacag cgttggtttt 481 gcgcaatttt ccgcgccgca atccgcagct tgacgtagca gaaagtggct gagtttagta 541 taatttagat agtcttcaac actttgcaca gggcctatga atacggttat ttatcaggcc 601 tatctataga gacagcaaag aactaggagc cgtgggcatg gaattcaccg tcagcaagag 661 cgatctggta cgtgagctga gtctctcgca gggtgtggtg gaaaaaaaga ccaccattcc 721 aatcctgtcg aacgtgctcc tggaggccgc ggacgatcgc attacgttga ctgcgaccga 781 cctggaactg ggcatccgct gttcttgccc ggcgcgcgtc aagaaagaag ggtccggcac 841 ggtgccggcg cgcaaactgc tcgattacat gcgtctgttg cccgaaggcg acgtgaacat 901 gaagttcctg gacaatcact gggccagtat caccagcgga cgttctcgca ccaggattgc 961 gggcatgtcg cgcgagagct tccccgaact gccgcagatg ccggagccga tcgcgcaggt 1021 gcccgtcaaa acgctggcct ccatgatcgc ccgtacgtcc ttcgccatct ccatggagga 1081 gtcgcgcttt acgctcaacg gcgcgctcct gctgatgcgc cccgaaggcc tcaccatggt 1141 cgccaccgat ggccaccgcc tcgcctacgt gcaggccgag cccgcggaga gcggcagcgc 1201 cgacaaaccc ttccgcgccc tcgtccccaa gaaggcgatg agcgaattga ccaagctcag 1261 cgatgatgcc ggcgaaggcg ccatggccat cgtcgccggt gatgacaatc acctgttctt 1321 ccaaattggc caccgcctgc tgatcacgcg aaagctcacc ggcaacttcc cggattacga 1381 gcgcgtcttg cccaaagatc accagttcat ggccaagctc gagaagggcg aaatccgctc 1441 ggcaatcgaa cgcgtggcgc agttcgccga tgaacggtcg cgcgccattc gggtgcaatt 1501 caacagcggc gaagtccgcg tcttcagttc cagcgtcgaa accggcgaga gcgaagagag 1561 cgttcccgcc gagtacacgg gtcccgatat cgagatcggt ttcaatgccc aatacctgct 1621 cgatttcctg cgtgcgattt ctcaggatca cgttgccttc gaattgaagg atcaaaaaag 1681 cgcgggcgaa ctccgtcccg ccggcgatgc catcgcggac cagtaccgct atgtagtcat 1741 gccgatgcgt atttgaagtt tagtcaaacc agtaaggaac tatgccaaac gaagtcaatc 1801 ccgtcggggg aaatggaaac gtctacgatt ccagcagtat caaagtcctg gaaggcctcg 1861 aagcagtgcg cctgcgccct gccatgtaca tcgggtctac aggcgagatg gggctgcacc 1921 atctggtcta tgaggtcgtc gataattccg tcgatgaagc tctagccggc tacgccaccc 1981 atatcgaggt gacgatccac g //