#!/usr/local/bin/perl -w # All tests must be run from the software directory; # make sure we are getting the modules from here: use lib '.'; use strict; use GO::TestHarness; n_tests(9); use GO::Parser; # Get args create_test_database("go_xreftest"); my $apph = getapph(); stmt_ok; my $parser = new GO::Parser ({handler=>'db'}); $parser->xslt('oboxml_to_godb_prestore'); $parser->handler->apph($apph); $parser->parse ("./t/data/xrefs-function.dat"); stmt_ok; # lets check we got stuff my $tl = $apph->get_terms({dbxref_dbname=>"MetaCyc"}); stmt_note(@$tl); stmt_check(@$tl == 2); $tl = $apph->get_terms({acc=>19381, dbxref_dbname=>"MetaCyc"}); my $t = $tl->[0]; stmt_check($t->dbxref_list); stmt_note($t->dbxref_list->[0]->as_str); stmt_check($t->dbxref_list->[0]->as_str eq "MetaCyc:P141-PWY"); $t = $apph->get_term({acc=>9628}); stmt_check($t->dbxref_list->[0]->as_str eq "MetaCyc:A-THIS-IS-MADE-UP"); stmt_check($t->dbxref_list->[1]->as_str eq "MetaCyc:B-THIS-IS-ALSO-MADE-UP"); $t = $apph->get_term({acc=>9605}); use Data::Dumper; print Dumper $t; stmt_check($t->dbxref_list->[0]->as_str eq "UM-MADE_UP:2,4-d"); $apph->disconnect; destroy_test_database(); stmt_ok;