#!/usr/local/bin/perl -w # All tests must be run from the software directory; # make sure we are getting the modules from here: use lib '.'; use strict; use GO::TestHarness; use GO::AppHandle; #use GO::Model::Graph; # ----- REQUIREMENTS ----- # ------------------------ n_tests(2); my $apph = get_readonly_apph; stmt_ok; my $prods = $apph->get_products({term=>"GO:0004386", symbol=>"abs", speciesdb=>"FB"}); my $good = 1; foreach my $prod (@$prods) { my $seq = $prod->seq_list->[0]; if ($seq) { printf "DB:%s\n", $_->xref_dbname foreach @{$seq->xref_list}; my ($spxr) = grep { $_->xref_dbname eq 'SPTR' || lc($_->xref_dbname) eq 'uniprot' } @{$seq->xref_list}; my $prod2 = $apph->get_product({seq_acc=>$spxr->xref_key}); stmt_note($prod2->symbol); $good &&= ($prod->symbol eq $prod2->symbol); my $prod3 = $apph->get_product({seq_name=>$seq->display_id}); stmt_note($prod3->symbol); $good &&= ($prod->symbol eq $prod3->symbol); } } stmt_check($good);