#!/usr/local/bin/perl -w use lib '.'; BEGIN { eval { require Test; }; use Test; plan tests => 4; } # All tests must be run from the software directory; # make sure we are getting the modules from here: use strict; # ----- REQUIREMENTS ----- # This test script tests the following requirements:/x # GO::Model::Graph must implement the GO::Builder interface; ie # it should be possible to pass in a graph to a parser and have it build # up a graph object # ------------------------ use GO::Basic; parse_obo("t/data/test-nucleolar.obo"); find_term(name=>"nuclear body"); print term->acc,"\n"; # OO usage print acc(),"\n"; # procedural usage ok(acc eq 'GO:0016604'); print "PARENTS\n"; get_parents; print names, "\n"; ok(names == 1); get_rparents; my @names = sort {$a cmp $b} names(); print "@names\n"; ok ("@names" eq "Gene_Ontology cell cellular_component intracellular nucleoplasm nucleus"); find_term("nucleoplasm"); print acc(),"\n"; # procedural usage get_rchildren; @names = sort {$a cmp $b} names(); print "@names\n"; ok ("@names" eq "RENT complex chromatin remodeling complex chromatin silencing complex nuclear body nuclear speck"); find_term(name=>"nuclear organisation and biogenesis"); print term->acc,"\n"; # OO usage