#!/usr/local/bin/perl -w use lib '.'; BEGIN { eval { require Test; }; use Test; plan tests => 7; } # All tests must be run from the software directory; # make sure we are getting the modules from here: use strict; use GO::Parser; use GO::ObjCache; # ----- REQUIREMENTS ----- # This test script tests the following requirements:/x # GO::Model::Graph must implement the GO::Builder interface; ie # it should be possible to pass in a graph to a parser and have it build # up a graph object # also tests id-mapping tag # ------------------------ my $parser = new GO::Parser ({handler=>'obj'}); my $graph = $parser->handler->g; ok(1); $parser->parse ("./t/data/relationship.obo"); $parser->parse ("./t/data/test-nucleolar.obo"); my $t = $graph->get_term("GO:0007569"); ok($t->name, 'cell aging'); my $parents = $graph->get_parent_terms_by_type($t->acc,'OBO_REL:part_of'); ok(@$parents == 1); my $t2 = shift @$parents; ok($t2->name eq 'cell death'); ok(1); my $rel = $graph->get_term('OBO_REL:derives_from'); ok($rel); print $rel->transitive_over, "\n"; ok($rel->transitive_over eq 'OBO_REL:part_of');