#!/usr/local/bin/perl -w use lib '.'; BEGIN { eval { require Test; }; use Test; plan tests => 5; } # All tests must be run from the software directory; # make sure we are getting the modules from here: use strict; use GO::Parser; use GO::ObjCache; # ----- REQUIREMENTS ----- # This test script tests the GO::Model::LogicalDefinition # ------------------------ my $parser = new GO::Parser ({handler=>'obj'}); my $graph = $parser->handler->g; ok(1); $parser->parse ("./t/data/llm.obo"); my $t = $graph->get_term_by_name("larval locomotory behavior"); printf "ns: %s\n", $t->namespace; ok ($t->namespace eq 'biological_process'); my $ldef = $t->logical_definition; printf "ldef ns: %s\n", $ldef->namespace; ok ($ldef->namespace eq 'foo'); foreach (@{$ldef->intersection_list}) { print "@$_\n"; } my $gacc = $ldef->generic_term_acc; print "$gacc\n"; ok($gacc eq 'GO:0007626'); my $diff = $ldef->differentia->[0]; ok("@$diff" eq "OBOL:during FBdv:00005336");