#!/usr/local/bin/perl -w use lib '.'; BEGIN { eval { require Test; }; use Test; plan tests => 6; } # All tests must be run from the software directory; # make sure we are getting the modules from here: use strict; use GO::Parser; use GO::ObjCache; # ----- REQUIREMENTS ----- # This test script tests the following requirements:/x # GO::Model::Graph must implement the GO::Builder interface; ie # it should be possible to pass in a graph to a parser and have it build # up a graph object # ------------------------ my $parser = new GO::Parser ({format=>'obo', handler=>'obj'}); my $graph = $parser->handler->g; ok(1); $parser->parse ("./t/data/test-nucleolar.obo"); ok($parser->acc2name_h->{'GO:0003723'} = 'RNA binding'); # lets check we got stuff #print $graph->dump; my $t = $graph->get_term("GO:0003723"); ok($t); ok(1); $t->add_synonym_by_type(foo=>"abc"); $t->add_synonym_by_type(foo=>"def"); $t->add_synonym_by_type(goo=>"xyz"); ok(scalar(@{$t->synonym_list}),3); $t->synonym_list([]); ok(scalar(@{$t->synonym_list}),0);