pp_addpm({At=>Top},<<'EOD'); =head1 NAME PDL::FFT - FFTs for PDL =head1 DESCRIPTION FFTs for PDL. These work for arrays of any dimension, although ones with small prime factors are likely to be the quickest. For historical reasons, these routines work in-place and do not recognize the in-place flag. That should be fixed. =head1 SYNOPSIS use PDL::FFT qw/:Func/; fft($real, $imag); ifft($real, $imag); realfft($real); realifft($real); fftnd($real,$imag); ifftnd($real,$imag); $kernel = kernctr($image,$smallk); fftconvolve($image,$kernel); =head1 ALTERNATIVE FFT PACKAGES Various other modules - such as L and L - contain FFT routines. However, unlike PDL::FFT, these modules are optional, and so may not be installed. =cut EOD pp_addhdr(' int fftn (int ndim, const int dims[], double Re[], double Im[], int iSign, double scaling); int fftnf (int ndim, const int dims[], float Re[], float Im[], int iSign, float scaling); void fft_free(); '); pp_addxs('',' int fft_free() CODE: fft_free(); RETVAL = 1; OUTPUT: RETVAL '); pp_def('fft', Pars => '[o,nc]real(n); [o,nc]imag(n);', GenericTypes => [F,D], Code => '$TFD(fftnf,fftn) ($SIZE(n), NULL , $P(real),$P(imag), 1, 1.);', Doc=>'Complex FFT of the "real" and "imag" arrays [inplace]' ); pp_def('ifft', Pars => '[o,nc]real(n); [o,nc]imag(n);', GenericTypes => [F,D], Code => '$TFD(fftnf,fftn) ($SIZE(n), NULL , $P(real),$P(imag), -1, -1.);', Doc=>'Complex Inverse FFT of the "real" and "imag" arrays [inplace]' ); pp_add_exported('',"fftnd ifftnd fftconvolve realfft realifft kernctr"); pp_addpm(<<'EOD'); use Carp; use PDL::Core qw/:Func/; use PDL::Basic qw/:Func/; use PDL::Types; use PDL::ImageND qw/kernctr/; # moved to ImageND since FFTW uses it too END { # tidying up required after using fftn print "Freeing FFT space\n" if $PDL::verbose; fft_free(); } sub todouble { my ($arg) = @_; $arg = $arg->double if $arg->get_datatype != $PDL_D; $_[0] = $arg; 1;} =head2 realfft() =for ref One-dimensional FFT of real function [inplace]. The real part of the transform ends up in the first half of the array and the imaginary part of the transform ends up in the second half of the array. =for usage realfft($real); =cut *realfft = \&PDL::realfft; sub PDL::realfft { barf("Usage: realfft(real(*)") if $#_ != 0; my ($a) = @_; todouble($a); # FIX: could eliminate $b my ($b) = 0*$a; fft($a,$b); my ($n) = int((($a->dims)[0]-1)/2); my($t); ($t=$a->slice("-$n:-1")) .= $b->slice("1:$n"); undef; } =head2 realifft() =for ref Inverse of one-dimensional realfft routine [inplace]. =for usage realifft($real); =cut *realifft = \&PDL::realifft; sub PDL::realifft { use PDL::Ufunc 'max'; barf("Usage: realifft(xfm(*)") if $#_ != 0; my ($a) = @_; todouble($a); my ($n) = int((($a->dims)[0]-1)/2); my($t); # FIX: could eliminate $b my ($b) = 0*$a; ($t=$b->slice("1:$n")) .= $a->slice("-$n:-1"); ($t=$a->slice("-$n:-1")) .= $a->slice("$n:1"); ($t=$b->slice("-$n:-1")) .= -$b->slice("$n:1"); ifft($a,$b); # Sanity check -- shouldn't happen carp "Bad inverse transform in realifft" if max(abs($b)) > 1e-6*max(abs($a)); undef; } =head2 fftnd() =for ref N-dimensional FFT (inplace) =for example fftnd($real,$imag); =cut *fftnd = \&PDL::fftnd; sub PDL::fftnd { barf "Must have real and imaginary parts for fftnd" if $#_ != 1; my ($r,$i) = @_; my ($n) = $r->getndims; barf "Dimensions of real and imag must be the same for fft" if ($n != $i->getndims); $n--; todouble($r); todouble($i); # need the copy in case $r and $i point to same memory $i = $i->copy; foreach (0..$n) { fft($r,$i); $r = $r->mv(0,$n); $i = $i->mv(0,$n); } $_[0] = $r; $_[1] = $i; undef; } =head2 ifftnd() =for ref N-dimensional inverse FFT =for example ifftnd($real,$imag); =cut *ifftnd = \&PDL::ifftnd; sub PDL::ifftnd { barf "Must have real and imaginary parts for ifftnd" if $#_ != 1; my ($r,$i) = @_; my ($n) = $r->getndims; barf "Dimensions of real and imag must be the same for ifft" if ($n != $i->getndims); todouble($r); todouble($i); # need the copy in case $r and $i point to same memory $i = $i->copy; $n--; foreach (0..$n) { ifft($r,$i); $r = $r->mv(0,$n); $i = $i->mv(0,$n); } $_[0] = $r; $_[1] = $i; undef; } EOD # This version uses the fft routines' internal row/column swapping. # Doing this instead through PDL seems quicker at the moment. if (0) { pp_def('fftnd', Pars => 'int dims(n); [o,nc]real(m); [o,nc]imag(m);', GenericTypes => [F,D], PMCode => ' sub PDL::fftnd{ barf("Usage: fftnd(real(*), imag(*)") if $#_ != 1; my($a,$b) = @_; my(@dimsa) = $a->dims; my(@dimsb) = $b->dims; my($dimsa) = long \@dimsa; foreach(@dimsa) { barf "Real and imaginary arrays must have same dimensions" if ($_ != shift @dimsb); } &PDL::_fftnd_int($dimsa, $a->clump(-1), $b->clump(-1)); } ', Code => ' int *dima, ns=$SIZE(n), j; dima = (int *) malloc(ns*sizeof(int)); if (!dima) barf("fftnd: Out of memory for dimension array"); for (j=0;jj); $TFD(fftnf,fftn)(ns, dima, $P(real),$P(imag), 1, 1.); free(dima); ', Doc=>'N-dimensional FFT [inplace].' ); pp_def('ifftnd', Pars => 'int dims(n); [o,nc]real(m); [o,nc]imag(m);', GenericTypes => [F,D], PMCode => ' sub PDL::ifftnd{ barf("Usage: ifftnd(real(*), imag(*)") if $#_ != 1; my($a,$b) = @_; my(@dimsa) = $a->dims; my(@dimsb) = $b->dims; my($dimsa) = long \@dimsa; foreach(@dimsa) { barf "Real and imaginary arrays must have same dimensions" if ($_ != shift @dimsb); } &PDL::_ifftnd_int($dimsa, $a->clump(-1), $b->clump(-1)); } ', Code => ' int *dima, ns=$SIZE(n), j; dima = (int *) malloc(ns*sizeof(int)); if (!dima) barf("ifftnd: Out of memory for dimension array"); for (j=0;jj); $TFD(fftnf,fftn)(ns, dima, $P(real),$P(imag), -1, -1.); free(dima); ', Doc=>'N-dimensional inverse FFT [inplace].' ); } pp_addpm(<<'EOD'); =head2 fftconvolve() =for ref N-dimensional convolution with periodic boundaries (FFT method) =for usage $kernel = kernctr($image,$smallk); fftconvolve($image,$kernel); fftconvolve works inplace, and returns an error array in kernel as an accuracy check -- all the values in it should be negligible. See also L, which performs speed-optimized convolution with a variety of boundary conditions. The sizes of the image and the kernel must be the same. L centres a small kernel to emulate the behaviour of the direct convolution routines. The speed cross-over between using straight convolution (L) and these fft routines is for kernel sizes roughly 7x7. =cut *fftconvolve = \&PDL::fftconvolve; sub PDL::fftconvolve { barf "Must have image & kernel for fftconvolve" if $#_ != 1; my ($hr, $hi) = @_; my ($n) = $hr->getndims; todouble($hr); todouble($hi); # need the copy in case $r and $i point to same memory $hi = $hi->copy; $hr = $hr->copy; fftnd($hr,$hi); convmath($hr->clump(-1),$hi->clump(-1)); my ($str1, $str2, $tmp, $i); chop($str1 = '-1:1,' x $n); chop($str2 = '1:-1,' x $n); # FIX: do these inplace -- cuts the arithmetic by a factor 2 as well. ($tmp = $hr->slice($str2)) += $hr->slice($str1)->copy; ($tmp = $hi->slice($str2)) -= $hi->slice($str1)->copy; for ($i = 0; $i<$n; $i++) { chop ($str1 = ('(0),' x $i).'-1:1,'.('(0),'x($n-$i-1))); chop ($str2 = ('(0),' x $i).'1:-1,'.('(0),'x($n-$i-1))); ($tmp = $hr->slice($str2)) += $hr->slice($str1)->copy; ($tmp = $hi->slice($str2)) -= $hi->slice($str1)->copy; } $hr->clump(-1)->set(0,$hr->clump(-1)->at(0)*2); $hi->clump(-1)->set(0,0.); ifftnd($hr,$hi); $_[0] = $hr; $_[1] = $hi; ($hr,$hi); } =cut EOD # convmath does local part of the maths necessary to handle a,b which # result from FFT of image & kernel in parallel. pp_def('convmath', Pars => '[o,nc]a(m); [o,nc]b(m);', Code => ' $GENERIC() t1, t2; loop(m) %{ t1 = $a(); t2 = $b(); $a() = t1*t2/2; $b() = (t2*t2-t1*t1)/4; %} ', # Doc => undef, Doc => 'Internal routine doing maths for convolution' ); pp_def('cmul', Pars => 'ar(); ai(); br(); bi(); [o]cr(); [o]ci();', Code => ' $GENERIC() ar, ai, br, bi; ar = $ar(); ai = $ai(); br = $br(); bi = $bi(); $cr() = ar*br-ai*bi; $ci() = ar*bi+ai*br; ', Doc => 'Complex multiplication' ); pp_def('cdiv', Pars => 'ar(); ai(); br(); bi(); [o]cr(); [o]ci();', Code => ' $GENERIC() ar, ai, br, bi, tt, dn; ar = $ar(); ai = $ai(); br = $br(); bi = $bi(); if (fabs(br) > fabs(bi)) { tt = bi/br; dn = br + tt*bi; $cr() = (ar+tt*ai)/dn; $ci() = (ai-tt*ar)/dn; } else { tt = br/bi; dn = br*tt + bi; $cr() = (ar*tt+ai)/dn; $ci() = (ai*tt-ar)/dn; } ', Doc => 'Complex division' ); pp_addpm(<<'ENDPM'); 1; # OK ENDPM pp_addpm(<<'EOD'); =head1 BUGS Where the source is marked `FIX', could re-implement using phase-shift factors on the transforms and some real-space bookkeeping, to save some temporary space and redundant transforms. =head1 AUTHOR This file copyright (C) 1997, 1998 R.J.R. Williams (rjrw@ast.leeds.ac.uk), Karl Glazebrook (kgb@aaoepp.aao.gov.au), Tuomas J. Lukka, (lukka@husc.harvard.edu). All rights reserved. There is no warranty. You are allowed to redistribute this software / documentation under certain conditions. For details, see the file COPYING in the PDL distribution. If this file is separated from the PDL distribution, the copyright notice should be included in the file. =cut EOD pp_done();