Changes INSTALL LICENSE Makefile.PL MANIFEST README ONTO-PERL.pod lib/OBO/APO/APO_ID_Set.pm lib/OBO/APO/APO_ID_Term_Map.pm lib/OBO/APO/APO_ID.pm lib/OBO/APO/GoaAssociation.pm lib/OBO/APO/GoaAssociationSet.pm lib/OBO/APO/GoaToRDF.pm lib/OBO/APO/NCBIToRDF.pm lib/OBO/APO/SwissProtToRDF.pm lib/OBO/Core/Dbxref.pm lib/OBO/Core/Def.pm lib/OBO/Core/IDspace.pm lib/OBO/Core/Instance.pm lib/OBO/Core/Ontology.pm lib/OBO/Core/Relationship.pm lib/OBO/Core/RelationshipType.pm lib/OBO/Core/SubsetDef.pm lib/OBO/Core/Synonym.pm lib/OBO/Core/SynonymTypeDef.pm lib/OBO/Core/Term.pm lib/OBO/Parser/GoaParser.pm lib/OBO/Parser/IntActParser.pm lib/OBO/Parser/NCBIParser.pm lib/OBO/Parser/OBOParser.pm lib/OBO/Parser/OWLParser.pm lib/OBO/Parser/UniProtParser.pm lib/OBO/Util/DbxrefSet.pm lib/OBO/Util/IDspaceSet.pm lib/OBO/Util/InstanceSet.pm lib/OBO/Util/Map.pm lib/OBO/Util/ObjectIdSet.pm lib/OBO/Util/ObjectSet.pm lib/OBO/Util/Ontolome.pm lib/OBO/Util/RelationshipTypeSet.pm lib/OBO/Util/Set.pm lib/OBO/Util/SubsetDefMap.pm lib/OBO/Util/SynonymSet.pm lib/OBO/Util/SynonymTypeDefSet.pm lib/OBO/Util/TermSet.pm lib/OBO/XO/OBO_ID.pm lib/OBO/XO/OBO_ID_Set.pm lib/OBO/XO/OBO_ID_Term_Map.pm doc/example00.html doc/example01.html doc/example02.html doc/example03.html doc/example04.html doc/example05.html doc/example06.html doc/example07.html doc/example08.html doc/example09.html doc/example10.html doc/example11.html doc/example12.html doc/example13.html scripts/get_ancestor_terms.pl scripts/get_child_terms.pl scripts/get_descendent_terms.pl scripts/get_lowest_common_ancestor.pl scripts/get_obsolete_term_id_vs_def_in_go.pl scripts/get_obsolete_term_id_vs_name_in_go.pl scripts/get_obsolete_terms.pl scripts/get_parent_terms.pl scripts/get_relationship_id_vs_relationship_def.pl scripts/get_relationship_id_vs_relationship_name.pl scripts/get_relationship_id_vs_relationship_namespace.pl scripts/get_relationship_types.pl scripts/get_root_terms.pl scripts/get_subontology_from.pl scripts/get_term_id_vs_term_def.pl scripts/get_term_id_vs_term_name.pl scripts/get_term_id_vs_term_namespace.pl scripts/get_term_local_neighbourhood.pl scripts/get_term_synonyms.pl scripts/get_terms.pl scripts/get_terms_and_synonyms.pl scripts/get_terms_by_name.pl scripts/go2owl.pl scripts/goa2rdf.pl scripts/names.xsl scripts/obo2apo.pl scripts/obo2owl.pl scripts/obo2rdf.pl scripts/obo2tran.pl scripts/obo2xml.pl scripts/obo_intersection.pl scripts/obo_transitive_reduction.pl scripts/obo_trimming.pl scripts/obo_union.pl scripts/owl2obo.pl scripts/xml2html.xsl t/data/all.goa t/data/alpha.obo t/data/apo_id_term.map t/data/cell.obo t/data/fake_ulo_apo.obo t/data/go.map t/data/goa_assoc_filt.txt t/data/my_parser_test.obo t/data/header.obo t/data/human.0.obo t/data/human.1.map t/data/human.map t/data/human_small-41.xml t/data/names_dummy.dmp t/data/nodes_dummy.dmp t/data/obo_id_term.map t/data/out_I_A_thaliana.obo t/data/pre_apo.obo t/data/test_ulo_apo2.owl t/data/ulo_apo.obo t/data/up.dat t/data/up.map t/APO_ID_Set.t t/APO_ID_Term_Map.t t/APO_ID.t t/Dbxref.t t/DbxrefSet.t t/Def.t t/GoaAssociation.t t/GoaAssociationSet.t t/GoaParser.t t/GoaToRDF.t t/IDspace.t t/IDspaceSet.t t/Instance.t t/InstanceSet.t t/IntActParser.t t/Map.t t/NCBIParser.t t/NCBIToRDF.t t/OBO_ID.t t/OBO_ID_Set.t t/OBO_ID_Term_Map.t t/OBOParser.t t/Ontology.t t/Ontolome.t t/OWLParser.t t/Relationship.t t/RelationshipType.t t/RelationshipTypeSet.t t/Set.t t/SubsetDef.t t/SubsetDefMap.t t/Synonym.t t/SynonymSet.t t/SynonymTypeDef.t t/SynonymTypeDefSet.t t/Term.t t/TermSet.t t/UniProtParser.t META.yml Module meta-data (added by MakeMaker) META.json Module JSON meta-data (added by MakeMaker)