#!/usr/local/bin/perl # $Id: obo2xml.pl 2010-09-29 erick.antezana $ # # Script : obo2xml.pl # # Purpose : Converts a file from OBO to XML. # # Usage : obo2xml.pl $pre_apo_obo_path > $pre_apo_xml_path # # License : Copyright (c) 2006-2011 by Erick Antezana. All rights reserved. # This program is free software; you can redistribute it and/or # modify it under the same terms as Perl itself. # # Contact : Erick Antezana # ############################################################################### use Carp; use strict; use warnings; use OBO::Parser::OBOParser; my $my_parser = OBO::Parser::OBOParser->new(); my $ontology = $my_parser->work(shift(@ARGV)); $ontology->export('xml'); exit 0; __END__ =head1 NAME obo2xml.pl - OBO to XML translator (APO scheme). =head1 DESCRIPTION This script transforms an OBO file into XML that follows the XML scheme. =head1 AUTHOR Erick Antezana, Eerick.antezana -@- gmail.comE =head1 COPYRIGHT AND LICENSE Copyright (C) 2006-2011 by Erick Antezana This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself, either Perl version 5.8.7 or, at your option, any later version of Perl 5 you may have available. =cut