format-version: 1.0
date: 28:06:2006 13:57
saved-by: easr
auto-generated-by: easr
synonymtypedef: diminutivo "diminutivo" NARROW
default-namespace: apo
remark: <p>This file holds the Upper Level Ontology in APO.</p>

[Term]
id: APO:B9999999
name: continuant
def: "Entities which endure, or continue to exist, through time while undergoing different sort of changes, including changes of place." [PMID:15892874]
exact_synonym: "endurant" [PMID:15892874]
broad_synonym: "thing" [PMID:15892874]
synonym: "cosa" []
synonym: "cosita" diminutivo []
is_a: APO:B0000000 ! entity

[Term]
id: APO:B0000000
name: entity
def: "A process or continuant." [APO:Bea]

[Term]
id: APO:B9999998
name: process
def: "Entities that unfold themselves in successive temporal phases." [PMID:15892874]
exact_synonym: "perdurant" [PMID:15892874]
broad_synonym: "ocurrent" [PMID:15892874]
is_a: APO:B0000000 ! entity

[Term]
id: APO:B9999997
name: gene
def: "A ± locatable \"region\" of genomic sequence, corresponding to a unit of inheritance, which is associated with regulatory regions, transcribed regions and/or other functional sequence regions." [SO:0000704]
is_a: APO:B9999999 ! continuant
exact_synonym: "a gene" []
exact_synonym: "un gene" []
exact_synonym: "un gen" []
relationship: part_of APO:B9999992 ! complex

[Term]
id: APO:B9999996
name: protein
is_a: APO:B9999999 ! continuant
relationship: part_of APO:B9999992 ! complex

[Term]
id: APO:B9999995
name: transcript
def: "An RNA synthesized on a DNA or RNA template by an RNA polymerase." [SO:0000673]
is_a: APO:B9999999 ! continuant

[Term]
id: APO:B9999994
name: interaction
is_a: APO:B9999998 ! process

[Term]
id: APO:B9999993
name: small molecule
is_a: APO:B9999999 ! continuant
exact_synonym: "petit molecule" []
exact_synonym: "pequena molecula" []
exact_synonym: "kleine molecule" []

[Term]
id: APO:B9999992
name: complex
is_a: APO:B9999999 ! continuant

[Term]
id: APO:B9999991
name: organism
def: "A biological entity whose ..." [APO:Bea]
is_a: APO:B9999999 ! continuant

[Term]
id: APO:B9999990
name: human
def: "..." [APO:Bea]
is_a: APO:B9999991 ! organism

[Term]
id: APO:B9999989
name: arabidopsis thaliana
def: "..." [APO:Bea]
is_a: APO:B9999991 ! organism

[Term]
id: APO:B9999988
name: sacaromises cerevisiae
def: "..." [APO:Bea]
is_a: APO:B9999991 ! organism

[Term]
id: APO:B9999987
name: sacaromises pombe
def: "..." [APO:Bea]
is_a: APO:B9999991 ! organism

[Term]
id: APO:B9999986
name: pathway
is_a: APO:B9999998 ! process

[Typedef]
id: is_a
name: is_a
builtin: true
def: "For continuants: C is_a C' if and only if: given any c that instantiates C at a time t, c instantiates C' at t. For processes: P is_a P' if and only if: that given any p that instantiates P, then p instantiates P'." [PMID:15892874]
comment: The is_a relationship is considered axiomatic by the obo file format specification
exact_synonym: "is_subtype_of" []
xref_analog: owl:subClassOf
is_reflexive: true
is_anti_symmetric: true
is_transitive: true

[Typedef]
id: part_of
name: part of
is_transitive: true