#!/usr/bin/perl -w package MOBY::authority; use strict; use Carp; use MOBY::Config; use vars qw($AUTOLOAD @ISA); use vars qw /$VERSION/; $VERSION = sprintf "%d.%02d", q$Revision: 1.3 $ =~ /: (\d+)\.(\d+)/; =head1 NAME MOBY::authority - a lightweight connection to the authority table in the database =head1 SYNOPSIS use MOBY::authority; my $Instance = MOBY::authority->new( authority_common_name => "genbank", authority_uri => "ncbi.nlm.nih.gov", contact_email => "mr.BIG@ncbi.nlm.nih.gov", ); print $Instance->authority_id; =cut =head1 DESCRIPTION representation of the authority table. Can write to the database =head1 AUTHORS Mark Wilkinson (mwilkinson@gene.pbi.nrc.ca) =cut { # Encapsulated: # DATA #___________________________________________________________ #ATTRIBUTES my %_attr_data = # DEFAULT ACCESSIBILITY ( authority_common_name => [ undef, 'read/write' ], authority_uri => [ undef, 'read/write' ], contact_email => [ undef, 'read/write' ], dbh => [ undef, 'read/write' ], ); #_____________________________________________________________ # METHODS, to operate on encapsulated class data # Is a specified object attribute accessible in a given mode sub _accessible { my ( $self, $attr, $mode ) = @_; $_attr_data{$attr}[1] =~ /$mode/; } # Classwide default value for a specified object attribute sub _default_for { my ( $self, $attr ) = @_; $_attr_data{$attr}[0]; } # List of names of all specified object attributes sub _standard_keys { keys %_attr_data; } sub authority_id { die "AUTHORITY_ID is deprecated. fix your code!\n"; } } sub new { my ( $caller, %args ) = @_; my $caller_is_obj = ref($caller); return $caller if $caller_is_obj; my $class = $caller_is_obj || $caller; my $proxy; my $self = bless {}, $class; foreach my $attrname ( $self->_standard_keys ) { if ( exists $args{$attrname} ) { $self->{$attrname} = $args{$attrname}; } elsif ($caller_is_obj) { $self->{$attrname} = $caller->{$attrname}; } else { $self->{$attrname} = $self->_default_for($attrname); } } my $dbh = $self->dbh; $CONFIG ||= MOBY::Config->new; # exported by Config.pm my $adaptor = $CONFIG->getDataAdaptor( datasource => 'mobycentral' ); my $result = $adaptor->query_authority(authority_uri => $self->authority_uri); my $row = shift(@$result); unless ($row) { my $insertid = $adaptor->insert_authority( authority_common_name => $self->authority_common_name, authority_uri => $self->authority_uri, contact_email => $self->contact_email); } else { $self->authority_common_name($row->{authority_common_name}); $self->authority_uri($row->{authority_uri}); $self->contact_email($row->{contact_email}); } return $self; } sub AUTOLOAD { no strict "refs"; my ( $self, $newval ) = @_; $AUTOLOAD =~ /.*::(\w+)/; my $attr = $1; if ( $self->_accessible( $attr, 'write' ) ) { *{$AUTOLOAD} = sub { if ( defined $_[1] ) { $_[0]->{$attr} = $_[1] } return $_[0]->{$attr}; }; ### end of created subroutine ### this is called first time only if ( defined $newval ) { $self->{$attr} = $newval; } return $self->{$attr}; } elsif ( $self->_accessible( $attr, 'read' ) ) { *{$AUTOLOAD} = sub { return $_[0]->{$attr}; }; ### end of created subroutine return $self->{$attr}; } # Must have been a mistake then... croak "No such method: $AUTOLOAD"; } sub DESTROY { } 1;