#----------------------------------------------------------------- # MOSES::MOBY::Def::Relationship # Author: Edward Kawas , # Martin Senger # For copyright and disclaimer see below. # # $Id: Relationship.pm,v 1.4 2008/04/29 19:41:31 kawas Exp $ #----------------------------------------------------------------- package MOSES::MOBY::Def::Relationship; use base qw( MOSES::MOBY::Base Exporter ); use strict; use vars qw( @EXPORT %ALLOWED_TYPES ); # add versioning to this module use vars qw /$VERSION/; $VERSION = sprintf "%d.%02d", q$Revision: 1.4 $ =~ /: (\d+)\.(\d+)/; # relationship types use constant ISA => 'ISA'; use constant HASA => 'HASA'; use constant HAS => 'HAS'; BEGIN { @EXPORT = qw( ISA HASA HAS); } =head1 NAME MOSES::MOBY::Def::Relationship - a definition of relationships between Moby data types =head1 SYNOPSIS use MOSES::MOBY::Def::Relationship; # create a new relationship my $relationship = new MOSES::MOBY::Def::Relationship ( memberName => 'myArticleName', datatype => 'DNASequence', raletionship => HASA ); # get the article name of the datatype in this relationship print $relationship->memberName; # set the article name of the datatype in this relationship $relationship->memberName ('myNewArticleName'); =cut =head1 DESCRIPTION A container representing a relationship of a BioMoby data type. =head1 AUTHORS Edward Kawas (edward.kawas [at] gmail [dot] com) Martin Senger (martin.senger [at] gmail [dot] com) =cut #----------------------------------------------------------------- # A list of allowed attribute names. See MOSES::MOBY::Base for details. #----------------------------------------------------------------- =head1 ACCESSIBLE ATTRIBUTES Details are in L. Here just a list of them: =over =item B A name how this relationship is known (an I
in the BioMoby speak). =item B A name of a data type that is related by this relationship. =item B A type of this relationship. Can be C, C or C. =back =cut { my %_allowed = ( memberName => { type => MOSES::MOBY::Base->STRING, post => sub { my ($self) = shift; $self->{original_memberName} = $self->{memberName}; $self->{memberName} = $self->escape_name ($self->{original_memberName}) } }, datatype => { type => MOSES::MOBY::Base->STRING, post => sub { my ($self) = shift; $self->{module_datatype} = $self->datatype2module ($self->{datatype}) } }, relationship => { type => MOSES::MOBY::Base->STRING, post => \&_check_relationship }, # used internally (but cannot start with underscore - Template would ignore it) module_datatype => undef, original_memberName => undef, ); sub _accessible { my ($self, $attr) = @_; exists $_allowed{$attr} or $self->SUPER::_accessible ($attr); } sub _attr_prop { my ($self, $attr_name, $prop_name) = @_; my $attr = $_allowed {$attr_name}; return ref ($attr) ? $attr->{$prop_name} : $attr if $attr; return $self->SUPER::_attr_prop ($attr_name, $prop_name); } } #----------------------------------------------------------------- # Checking relationship type. #----------------------------------------------------------------- sub _check_relationship { my ($self, $attr) = @_; $self->throw ('Invalid relationship type: ' . $self->relationship) unless exists $ALLOWED_TYPES{$self->relationship}; } %ALLOWED_TYPES = (HAS => 1, HASA => 1, ISA => 1); #----------------------------------------------------------------- # init #----------------------------------------------------------------- sub init { my ($self) = shift; $self->SUPER::init(); $self->relationship (HASA); } 1; __END__