#----------------------------------------------------------------- # MOSES::MOBY::Def::Service # Author: Edward Kawas , # Martin Senger # For copyright and disclaimer see below. # # $Id: Service.pm,v 1.5 2009/08/27 19:39:26 kawas Exp $ #----------------------------------------------------------------- package MOSES::MOBY::Def::Service; use base qw( MOSES::MOBY::Base ); use XML::LibXML; use strict; # add versioning to this module use vars qw /$VERSION/; $VERSION = sprintf "%d.%02d", q$Revision: 1.5 $ =~ /: (\d+)\.(\d+)/; =head1 NAME MOSES::MOBY::Def::Service - a BioMoby service definition =head1 SYNOPSIS use MOSES::MOBY::Def::MobyService; # create a new BioMoby service definition my $service = new MOSES::MOBY::Def::Service ( name => 'myService', authority => 'www.tulsoft.org', email => 'george.bush@shame.gov', description => 'Hello world service!', url => 'http://my.service.com/endpoint', signatureURL=> 'http://my.service.com/path/to/rdf,' category => 'moby', type => 'retrival', inputs => ( {memberName => 'annotation', datatype => 'Feature'} ), outputs => ( {memberName => 'annotation', datatype => 'Feature'} ), secondarys => ( {memberName => 'annotation', datatype => 'Feature'} ), ); # get the LSID of this service print $service->lsid; # get the service details as a string print $service->toString; # get the service as a string of XML # (same format used to register the service) my $xml = $service->toXML->toString (1); =cut =head1 DESCRIPTION This module contains a definition of a BioMoby Service. With this module, you can create a service definition, set its details and then use the output from toXML to register this service with a mobycentral registry. =head1 AUTHORS Edward Kawas (edward.kawas [at] gmail [dot] com) Martin Senger (martin.senger [at] gmail [dot] com) =cut #----------------------------------------------------------------- # A list of allowed attribute names. See MOSES::MOBY::Base for details. #----------------------------------------------------------------- =head1 ACCESSIBLE ATTRIBUTES Details are in L. Here just a list of them: =over =item B A name of this service. =item B =item B =item B =item B =item B =item B =item B The category of service. Must be one of moby, cgi, or wsdl. =item B A list of inputs for this service. Must be of type C. =item B A list of outputs for this service. Must be of type C. =item B A list of secondary parameters for this service. Must be of type C. =item B =back =cut { my %_allowed = ( name => { type => MOSES::MOBY::Base->STRING, post => \&_create__module_name }, authority => { type => MOSES::MOBY::Base->STRING, post => \&_create__module_name }, email => undef, description => undef, signatureURL => undef, url => undef, rdf => undef, category => { type => MOSES::MOBY::Base->STRING, post => \&_check_category }, authoritative => {type => MOSES::MOBY::Base->BOOLEAN }, type => undef, inputs => {type => 'MOSES::MOBY::Def::PrimaryData', is_array => 1}, outputs => {type => 'MOSES::MOBY::Def::PrimaryData', is_array => 1}, secondarys => {type => 'MOSES::MOBY::Def::SecondaryData', is_array => 1}, lsid => undef, # used internally (but cannot start with underscore - Template would ignore them) module_name => undef, ); sub _accessible { my ($self, $attr) = @_; exists $_allowed{$attr} or $self->SUPER::_accessible ($attr); } sub _attr_prop { my ($self, $attr_name, $prop_name) = @_; my $attr = $_allowed {$attr_name}; return ref ($attr) ? $attr->{$prop_name} : $attr if $attr; return $self->SUPER::_attr_prop ($attr_name, $prop_name); } } sub _create__module_name { my ($self) = shift; $self->{module_name} = $self->service2module ($self->{authority}, $self->{name}); } #----------------------------------------------------------------- =head1 SUBROUTINES =cut #----------------------------------------------------------------- # init #----------------------------------------------------------------- sub init { my ($self) = shift; $self->SUPER::init(); $self->inputs ([]); $self->outputs ([]); $self->secondarys ([]); $self->category ('moby'); $self->authoritative('true'); } #----------------------------------------------------------------- # toXML #----------------------------------------------------------------- sub toXML { my $self = shift; my $root = $self->createXMLElement ('registerService'); # category my $node = $self->createXMLElement ("Category"); $node->appendTextNode ($self->category) if $self->category; $root->addChild ($node); # service name $node = $self->createXMLElement ("serviceName"); $node->appendTextNode ($self->name) if $self->name; $root->addChild ($node); # service type $node = $self->createXMLElement ("serviceType"); $node->appendTextNode ($self->type) if $self->type; $root->addChild ($node); # email $node = $self->createXMLElement ("contactEmail"); $node->appendTextNode ($self->email) if $self->email; $root->addChild ($node); # authURI $node = $self->createXMLElement ("authURI"); $node->appendTextNode ($self->authority) if $self->authority; $root->addChild ($node); # description $node = $self->createXMLElement ("Description"); $node->addChild (XML::LibXML::CDATASection->new ($self->description)) if $self->description; $root->addChild ($node); # signature url $node = $self->createXMLElement ("signatureURL"); $node->appendTextNode ($self->signatureURL) if $self->signatureURL; $root->addChild ($node); # URL $node = $self->createXMLElement ("URL"); $node->appendTextNode ($self->url) if $self->url; $root->addChild ($node); # authoritative $node = $self->createXMLElement ("authoritativeService"); $node->appendTextNode ($self->authoritative ? '1' : '0'); $root->addChild ($node); # add inputs $node = $self->createXMLElement ("Input"); foreach my $input (@{ $self->inputs }) { $node->addChild ($input->toXML); } $root->addChild ($node); # add secondaries $node = $self->createXMLElement ("secondaryArticles"); foreach my $sec (@{ $self->secondarys }) { $node->addChild ($sec->toXML); } $root->addChild ($node); # add outputs $node =$self->createXMLElement ("Output"); foreach my $output (@{ $self->outputs }) { $node->addChild ($output->toXML); } $root->addChild ($node); return $root; } #----------------------------------------------------------------- # Checking service type. #----------------------------------------------------------------- sub _check_category { my ($self, $attr) = @_; $self->throw ('Invalid service category: ' . $self->category) unless $self->category =~ /^cgi|wsdl|moby|moby\-async|post|cgi\-async$/i; } 1; __END__