Generic Genome Browser, v2 (Cloud Image)

Welcome to the Generic Genome Browser (Cloud Image)!

Documentation

Online tutorial and sample data files
/var/www/gbrowse2/tutorial.
Installation and configuration manual
GBrowse 2.0 HOWTO
Example scripts to control GBrowse from the command line
/var/www/gbrowse2/example_scripts

Starter Databases

A series of starter databases have been preconfigured for you, consisting of:

You may add additional starter genomes at any time by running the command line script gbrowse_import_ucsc.pl and providing the UCSC Genome Browser build name:

 gbrowse_import_ucsc.pl mm10 'M. musculus genome (mm10, GRCm38)' 

Directory Paths

For future reference, here is where you've installed GBrowse's various components:

GBrowse documentation, stylesheets and in-memory databases.
$HTDOCS

GBrowse configuration files
$CONF

Preinstalled sample database(s)
$DATABASES

GBrowse CGI (web) scripts

Temporary directories for cached images and sessions.
$TMP

Learning More

To find out more about Gbrowse, try the:


Lincoln D. Stein, lstein@cshl.org
Cold Spring Harbor Laboratory
Last modified: Thu Mar 18 18:59:16 PDT 2010