#include "EXTERN.h"
#include "perl.h"
#include "XSUB.h"

#include "ppport.h"

#include "emboss_perl.h"
#include "bio_emboss_config.h"

MODULE = Bio::Emboss_embpdb		PACKAGE = Bio::Emboss		

PROTOTYPES: ENABLE

 # code from embpdb.c: automatically generated

AjBool
embPdbidToSp (pdb, spr, list)
       const AjPStr pdb
       AjPStr& spr
       const AjPList list
    OUTPUT:
       RETVAL
       spr

AjBool
embPdbidToAcc (pdb, acc, list)
       const AjPStr pdb
       AjPStr& acc
       const AjPList list
    OUTPUT:
       RETVAL
       acc

AjBool
embAtomInContact (atm1, atm2, thresh, vdw)
       const AjPAtom atm1
       const AjPAtom atm2
       float thresh
       const AjPVdwall vdw
    OUTPUT:
       RETVAL

float
embAtomDistance (atm1, atm2, vdw)
       const AjPAtom atm1
       const AjPAtom atm2
       const AjPVdwall vdw
    OUTPUT:
       RETVAL

float
embVdwRad (atm, vdw)
       const AjPAtom atm
       const AjPVdwall vdw
    OUTPUT:
       RETVAL

AjBool
embPdbToIdx (idx, pdb, res, chn)
       ajint& idx
       const AjPPdb pdb
       const AjPStr res
       ajint chn
    OUTPUT:
       RETVAL
       idx

AjBool
embPdbListHeterogens (pdb, list_heterogens, siz_heterogens, nhet, logf)
       const AjPPdb pdb
       AjPList& list_heterogens
       AjPInt& siz_heterogens
       ajint& nhet
       AjPFile logf
    OUTPUT:
       RETVAL
       list_heterogens
       siz_heterogens
       nhet

AjBool
embPdbResidueIndexI (pdb, chn, idx)
       const AjPPdb pdb
       ajint chn
       AjPInt& idx
    OUTPUT:
       RETVAL
       idx

AjBool
embPdbResidueIndexC (pdb, chn, idx)
       const AjPPdb pdb
       char chn
       AjPInt& idx
    OUTPUT:
       RETVAL
       idx

AjBool
embPdbResidueIndexICA (pdb, chn, idx, nres)
       const AjPPdb pdb
       ajint chn
       AjPUint& idx
       ajint& nres
    OUTPUT:
       RETVAL
       idx
       nres

AjBool
embPdbResidueIndexCCA (pdb, chn, idx, nres)
       const AjPPdb pdb
       char chn
       AjPUint& idx
       ajint& nres
    OUTPUT:
       RETVAL
       idx
       nres

AjBool
embStrideToThree (to, from)
       AjPStr& to
       const AjPStr from
    OUTPUT:
       RETVAL
       to