AUTHORS
Bio/Align/AlignI.pm
Bio/Align/DNAStatistics.pm
Bio/Align/PairwiseStatistics.pm
Bio/Align/ProteinStatistics.pm
Bio/Align/StatisticsI.pm
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Bio/AlignIO.pm
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Bio/SeqIO/gcg.pm
Bio/SeqIO/genbank.pm
Bio/SeqIO/interpro.pm
Bio/SeqIO/kegg.pm
Bio/SeqIO/largefasta.pm
Bio/SeqIO/lasergene.pm
Bio/SeqIO/locuslink.pm
Bio/SeqIO/metafasta.pm
Bio/SeqIO/MultiFile.pm
Bio/SeqIO/phd.pm
Bio/SeqIO/pir.pm
Bio/SeqIO/pln.pm
Bio/SeqIO/qual.pm
Bio/SeqIO/raw.pm
Bio/SeqIO/scf.pm
Bio/SeqIO/strider.pm
Bio/SeqIO/swiss.pm
Bio/SeqIO/tab.pm
Bio/SeqIO/table.pm
Bio/SeqIO/tigr.pm
Bio/SeqIO/tigrxml.pm
Bio/SeqIO/tinyseq.pm
Bio/SeqIO/tinyseq/tinyseqHandler.pm
Bio/SeqIO/ztr.pm
Bio/SeqUtils.pm
Bio/SimpleAlign.pm
Bio/SimpleAnalysisI.pm
Bio/Species.pm
Bio/Structure/Atom.pm
Bio/Structure/Chain.pm
Bio/Structure/Entry.pm
Bio/Structure/IO.pm
Bio/Structure/IO/pdb.pm
Bio/Structure/Model.pm
Bio/Structure/Residue.pm
Bio/Structure/SecStr/DSSP/Res.pm
Bio/Structure/SecStr/STRIDE/Res.pm
Bio/Structure/StructureI.pm
Bio/Symbol/Alphabet.pm
Bio/Symbol/AlphabetI.pm
Bio/Symbol/DNAAlphabet.pm
Bio/Symbol/ProteinAlphabet.pm
Bio/Symbol/README.Symbol
Bio/Symbol/Symbol.pm
Bio/Symbol/SymbolI.pm
Bio/Taxon.pm
Bio/Taxonomy.pm
Bio/Taxonomy/FactoryI.pm
Bio/Taxonomy/Node.pm
Bio/Taxonomy/Taxon.pm
Bio/Taxonomy/Tree.pm
Bio/Tools/AlignFactory.pm
Bio/Tools/Alignment/Consed.pm
Bio/Tools/Alignment/Trim.pm
Bio/Tools/Analysis/DNA/ESEfinder.pm
Bio/Tools/Analysis/Protein/Domcut.pm
Bio/Tools/Analysis/Protein/ELM.pm
Bio/Tools/Analysis/Protein/GOR4.pm
Bio/Tools/Analysis/Protein/HNN.pm
Bio/Tools/Analysis/Protein/Mitoprot.pm
Bio/Tools/Analysis/Protein/NetPhos.pm
Bio/Tools/Analysis/Protein/Scansite.pm
Bio/Tools/Analysis/Protein/Sopma.pm
Bio/Tools/Analysis/SimpleAnalysisBase.pm
Bio/Tools/AnalysisResult.pm
Bio/Tools/Blat.pm
Bio/Tools/BPbl2seq.pm
Bio/Tools/BPlite.pm
Bio/Tools/BPlite/HSP.pm
Bio/Tools/BPlite/Iteration.pm
Bio/Tools/BPlite/Sbjct.pm
Bio/Tools/BPpsilite.pm
Bio/Tools/CodonTable.pm
Bio/Tools/Coil.pm
Bio/Tools/dpAlign.pm
Bio/Tools/ECnumber.pm
Bio/Tools/EMBOSS/Palindrome.pm
Bio/Tools/EPCR.pm
Bio/Tools/Eponine.pm
Bio/Tools/ERPIN.pm
Bio/Tools/Est2Genome.pm
Bio/Tools/ESTScan.pm
Bio/Tools/Fgenesh.pm
Bio/Tools/FootPrinter.pm
Bio/Tools/Gel.pm
Bio/Tools/Geneid.pm
Bio/Tools/Genemark.pm
Bio/Tools/Genewise.pm
Bio/Tools/Genomewise.pm
Bio/Tools/Genscan.pm
Bio/Tools/GFF.pm
Bio/Tools/Glimmer.pm
Bio/Tools/Grail.pm
Bio/Tools/GuessSeqFormat.pm
Bio/Tools/HMM.pm
Bio/Tools/HMMER/Domain.pm
Bio/Tools/HMMER/Results.pm
Bio/Tools/HMMER/Set.pm
Bio/Tools/Hmmpfam.pm
Bio/Tools/ipcress.pm
Bio/Tools/isPcr.pm
Bio/Tools/IUPAC.pm
Bio/Tools/Lucy.pm
Bio/Tools/MZEF.pm
Bio/Tools/OddCodes.pm
Bio/Tools/Phylo/Molphy.pm
Bio/Tools/Phylo/Molphy/Result.pm
Bio/Tools/Phylo/PAML.pm
Bio/Tools/Phylo/PAML/ModelResult.pm
Bio/Tools/Phylo/PAML/Result.pm
Bio/Tools/Phylo/Phylip/ProtDist.pm
Bio/Tools/pICalculator.pm
Bio/Tools/Prediction/Exon.pm
Bio/Tools/Prediction/Gene.pm
Bio/Tools/Primer/Assessor/Base.pm
Bio/Tools/Primer/AssessorI.pm
Bio/Tools/Primer/Feature.pm
Bio/Tools/Primer/Pair.pm
Bio/Tools/Primer3.pm
Bio/Tools/Prints.pm
Bio/Tools/Profile.pm
Bio/Tools/Promoterwise.pm
Bio/Tools/PrositeScan.pm
Bio/Tools/Pseudowise.pm
Bio/Tools/pSW.pm
Bio/Tools/QRNA.pm
Bio/Tools/RandomDistFunctions.pm
Bio/Tools/RepeatMasker.pm
Bio/Tools/RestrictionEnzyme.pm
Bio/Tools/RNAMotif.pm
Bio/Tools/Run/GenericParameters.pm
Bio/Tools/Run/ParametersI.pm
Bio/Tools/Run/README
Bio/Tools/Run/RemoteBlast.pm
Bio/Tools/Run/StandAloneBlast.pm
Bio/Tools/Run/WrapperBase.pm
Bio/Tools/Seg.pm
Bio/Tools/SeqPattern.pm
Bio/Tools/SeqStats.pm
Bio/Tools/SeqWords.pm
Bio/Tools/Sigcleave.pm
Bio/Tools/Signalp.pm
Bio/Tools/Sim4/Exon.pm
Bio/Tools/Sim4/Results.pm
Bio/Tools/SiRNA.pm
Bio/Tools/SiRNA/Ruleset/saigo.pm
Bio/Tools/SiRNA/Ruleset/tuschl.pm
Bio/Tools/Spidey/Exon.pm
Bio/Tools/Spidey/Results.pm
Bio/Tools/Tmhmm.pm
Bio/Tools/tRNAscanSE.pm
Bio/Tree/AlleleNode.pm
Bio/Tree/Compatible.pm
Bio/Tree/DistanceFactory.pm
Bio/Tree/Draw/Cladogram.pm
Bio/Tree/Node.pm
Bio/Tree/NodeI.pm
Bio/Tree/NodeNHX.pm
Bio/Tree/RandomFactory.pm
Bio/Tree/Statistics.pm
Bio/Tree/Tree.pm
Bio/Tree/TreeFunctionsI.pm
Bio/Tree/TreeI.pm
Bio/TreeIO.pm
Bio/TreeIO/cluster.pm
Bio/TreeIO/lintree.pm
Bio/TreeIO/newick.pm
Bio/TreeIO/nexus.pm
Bio/TreeIO/nhx.pm
Bio/TreeIO/pag.pm
Bio/TreeIO/svggraph.pm
Bio/TreeIO/tabtree.pm
Bio/TreeIO/TreeEventBuilder.pm
Bio/UpdateableSeqI.pm
Bio/Variation/AAChange.pm
Bio/Variation/AAReverseMutate.pm
Bio/Variation/Allele.pm
Bio/Variation/DNAMutation.pm
Bio/Variation/IO.pm
Bio/Variation/IO/flat.pm
Bio/Variation/IO/xml.pm
Bio/Variation/README
Bio/Variation/RNAChange.pm
Bio/Variation/SeqDiff.pm
Bio/Variation/SNP.pm
Bio/Variation/VariantI.pm
Bio/WebAgent.pm
BUGS
Build.PL
Changes
DEPENDENCIES
DEPRECATED
doc/Deobfuscator/bin/deob_index.pl
doc/Deobfuscator/Build.PL
doc/Deobfuscator/cgi-bin/deob_detail.cgi
doc/Deobfuscator/cgi-bin/deob_flowchart.png
doc/Deobfuscator/cgi-bin/deob_help.html
doc/Deobfuscator/cgi-bin/deob_interface.cgi
doc/Deobfuscator/Changes
doc/Deobfuscator/lib/Deobfuscator.pm
doc/Deobfuscator/LICENSE
doc/Deobfuscator/Makefile.PL
doc/Deobfuscator/MANIFEST
doc/Deobfuscator/META.yml
doc/Deobfuscator/README
doc/Deobfuscator/t/00.load.t
doc/Deobfuscator/t/pod.t
doc/makedoc.PL
doc/README
examples/align/align_on_codons.pl
examples/align/aligntutorial.pl
examples/align/clustalw.pl
examples/align/simplealign.pl
examples/biblio/biblio-eutils-example.pl
examples/biblio/biblio-soap-example.pl
examples/biblio/biblio_soap.pl
examples/Bio-DB-GFF/load_ucsc.pl
examples/biographics/all_glyphs.pl
examples/biographics/dynamic_glyphs.pl
examples/biographics/feature_data.gff
examples/biographics/feature_data.txt
examples/biographics/lots_of_glyphs.pl
examples/biographics/render_sequence.pl
examples/bioperl.pl
examples/cluster/dbsnp.pl
examples/contributed/nmrpdb_parse.pl
examples/contributed/prosite2perl.pl
examples/contributed/rebase2list.pl
examples/db/dbfetch
examples/db/est_tissue_query.pl
examples/db/gb2features.pl
examples/db/get_seqs.pl
examples/db/getGenBank.pl
examples/db/rfetch.pl
examples/db/use_registry.pl
examples/generate_random_seq.pl
examples/liveseq/change_gene.pl
examples/longorf.pl
examples/make_primers.pl
examples/popgen/parse_calc_stats.pl
examples/rev_and_trans.pl
examples/revcom_dir.pl
examples/root/exceptions1.pl
examples/root/exceptions2.pl
examples/root/exceptions3.pl
examples/root/exceptions4.pl
examples/root/lib/Bio/PrimarySeq.pm
examples/root/lib/Bio/PrimarySeqI.pm
examples/root/lib/Bio/Seq.pm
examples/root/lib/Bio/SeqI.pm
examples/root/lib/TestInterface.pm
examples/root/lib/TestObject.pm
examples/root/README
examples/searchio/blast_example.pl
examples/searchio/custom_writer.pl
examples/searchio/hitwriter.pl
examples/searchio/hspwriter.pl
examples/searchio/htmlwriter.pl
examples/searchio/psiblast_features.pl
examples/searchio/psiblast_iterations.pl
examples/searchio/rawwriter.pl
examples/searchio/resultwriter.pl
examples/searchio/waba2gff.pl
examples/searchio/waba2gff3.pl
examples/sirna/rnai_finder.cgi
examples/sirna/TAG
examples/structure/structure-io.pl
examples/subsequence.cgi
examples/tk/gsequence.pl
examples/tk/hitdisplay.pl
examples/tools/extract_genes.pl
examples/tools/gb_to_gff.pl
examples/tools/gff2ps.pl
examples/tools/parse_codeml.pl
examples/tools/psw.pl
examples/tools/run_genscan.pl
examples/tools/run_primer3.pl
examples/tools/seq_pattern.pl
examples/tools/standaloneblast.pl
examples/tree/paup2phylip.pl
INSTALL
INSTALL.WIN
LICENSE
maintenance/authors.pl
maintenance/check_NAME.pl
maintenance/check_URLs.pl
maintenance/modules.pl
maintenance/ncbi_blast_switches.pl
maintenance/pod.pl
maintenance/README
maintenance/symlink_script.pl
maintenance/symlink_scripts.PLS
maintenance/version.pl
Makefile.PL
MANIFEST			This list of files
META.yml
models/biblio.dia
models/bio_liveseq_variation.dia
models/bio_map.dia
models/bio_restriction.dia
models/bioperl.dia
models/coordinatemapper.dia
models/map_proposal.txt
models/maps_and_markers.dia
models/popgen.dia
models/population_proposal.txt
models/README
ModuleBuildBioperl.pm
PLATFORMS
README
scripts/biblio/biblio.PLS
scripts/biblio/TAG
scripts/Bio-DB-GFF/bp_genbank2gff.PLS
scripts/Bio-DB-GFF/bulk_load_gff.PLS
scripts/Bio-DB-GFF/fast_load_gff.PLS
scripts/Bio-DB-GFF/genbank2gff3.PLS
scripts/Bio-DB-GFF/generate_histogram.PLS
scripts/Bio-DB-GFF/load_gff.PLS
scripts/Bio-DB-GFF/meta_gff.PLS
scripts/Bio-DB-GFF/process_gadfly.PLS
scripts/Bio-DB-GFF/process_sgd.PLS
scripts/Bio-DB-GFF/process_wormbase.PLS
scripts/Bio-DB-GFF/README
scripts/Bio-DB-GFF/TAG
scripts/Bio-SeqFeature-Store/bp_seqfeature_load.PLS
scripts/biographics/bp_embl2picture.PLS
scripts/biographics/bp_glyphs1-demo.PLS
scripts/biographics/bp_glyphs2-demo.PLS
scripts/das/README
scripts/das/TAG
scripts/DB/biofetch_genbank_proxy.PLS
scripts/DB/bioflat_index.PLS
scripts/DB/biogetseq.PLS
scripts/DB/flanks.PLS
scripts/DB/TAG
scripts/graphics/contig_draw.PLS
scripts/graphics/feature_draw.PLS
scripts/graphics/frend.PLS
scripts/graphics/README
scripts/graphics/search_overview.PLS
scripts/graphics/TAG
scripts/index/bp_fetch.PLS
scripts/index/bp_index.PLS
scripts/index/bp_seqret.PLS
scripts/index/TAG
scripts/popgen/composite_LD.PLS
scripts/popgen/heterogeneity_test.PLS
scripts/README
scripts/searchio/fastam9_to_table.PLS
scripts/searchio/filter_search.PLS
scripts/searchio/hmmer_to_table.PLS
scripts/searchio/parse_hmmsearch.PLS
scripts/searchio/README
scripts/searchio/search2table.PLS
scripts/searchio/TAG
scripts/seq/extract_feature_seq.PLS
scripts/seq/make_mrna_protein.PLS
scripts/seq/seqconvert.PLS
scripts/seq/split_seq.PLS
scripts/seq/TAG
scripts/seq/translate_seq.PLS
scripts/seq/unflatten_seq.PLS
scripts/seqstats/aacomp.PLS
scripts/seqstats/chaos_plot.PLS
scripts/seqstats/gccalc.PLS
scripts/seqstats/oligo_count.PLS
scripts/seqstats/TAG
scripts/taxa/classify_hits_kingdom.PLS
scripts/taxa/local_taxonomydb_query.PLS
scripts/taxa/query_entrez_taxa.PLS
scripts/taxa/TAG
scripts/taxa/taxid4species.PLS
scripts/taxa/taxonomy2tree.PLS
scripts/tree/blast2tree.PLS
scripts/tree/nexus2nh.PLS
scripts/tree/TAG
scripts/tree/tree2pag.PLS
scripts/utilities/bp_mrtrans.PLS
scripts/utilities/bp_nrdb.PLS
scripts/utilities/bp_sreformat.PLS
scripts/utilities/dbsplit.PLS
scripts/utilities/mask_by_search.PLS
scripts/utilities/mutate.PLS
scripts/utilities/pairwise_kaks.PLS
scripts/utilities/README
scripts/utilities/remote_blast.PLS
scripts/utilities/search2alnblocks.PLS
scripts/utilities/search2BSML.PLS
scripts/utilities/search2gff.PLS
scripts/utilities/search2tribe.PLS
scripts/utilities/seq_length.PLS
scripts/utilities/TAG
t/AAChange.t
t/AAReverseMutate.t
t/abi.t
t/ace.t
t/AlignIO.t
t/AlignStats.t
t/AlignUtil.t
t/alignUtilities.t
t/Allele.t
t/Alphabet.t
t/Annotation.t
t/AnnotationAdaptor.t
t/asciitree.t
t/Assembly.t
t/Biblio.t
t/Biblio_biofetch.t
t/Biblio_eutils.t
t/BiblioReferences.t
t/BioDBGFF.t
t/BioDBSeqFeature.t
t/BioFetch_DB.t
t/BioGraphics.t
t/BlastIndex.t
t/bsml_sax.t
t/Chain.t
t/chaosxml.t
t/cigarstring.t
t/ClusterIO.t
t/Coalescent.t
t/CodonTable.t
t/Compatible.t
t/consed.t
t/CoordinateGraph.t
t/CoordinateMapper.t
t/Correlate.t
t/ctf.t
t/CytoMap.t
t/data/1A11.pdb
t/data/1A3I.pdb
t/data/1BPT.pdb
t/data/503384.MEGABLAST.0
t/data/503384.MEGABLAST.2
t/data/5X_1895.FASTXY
t/data/8HVP.pdb
t/data/a_thaliana.blastn
t/data/AAC12660.fa
t/data/aaml.mlc
t/data/aaml_pairwise.mlc
t/data/AB077698.gb
t/data/acefile.ace.1
t/data/acefile.singlets
t/data/adh.mb_tree.nexus
t/data/AE003528_ecoli.bls
t/data/AE003644_Adh-genomic.gb
t/data/AF032047.gbk
t/data/AF165282.gb
t/data/AHCYL1.kegg
t/data/alnfile.fasta
t/data/amino.fa
t/data/AnnIX-v003.gbk
t/data/ar.embl
t/data/ATF14F8.gbk
t/data/atp1.matrix
t/data/ay007676.gb
t/data/AY095303S1.gbk
t/data/ay116458.gb
t/data/ay149291.gb
t/data/AY763288.gb
t/data/BAB68554.gb
t/data/barns-combined.nex
t/data/baseml.pairwise
t/data/baseml.usertree
t/data/basic-bush.nex
t/data/basic-ladder.nex
t/data/BC000007.gbk
t/data/BEL16-LTR_AG.embl
t/data/biodbgff/test.gff
t/data/biodbgff/test.gff3
t/data/biofpc.cor
t/data/biofpc.fpc
t/data/biographics/feature_data.txt
t/data/biographics/t1/version1.gif
t/data/biographics/t1/version1.png
t/data/biographics/t1/version2.gif
t/data/biographics/t1/version2.png
t/data/biographics/t1/version3.png
t/data/biographics/t1/version4.png
t/data/biographics/t1/version5.png
t/data/biographics/t1/version6.png
t/data/biographics/t1/version7.png
t/data/biographics/t1/version8.png
t/data/biographics/t2/version1.gif
t/data/biographics/t2/version1.png
t/data/biographics/t2/version10.png
t/data/biographics/t2/version11.png
t/data/biographics/t2/version12.png
t/data/biographics/t2/version13.png
t/data/biographics/t2/version14.png
t/data/biographics/t2/version2.gif
t/data/biographics/t2/version2.png
t/data/biographics/t2/version3.png
t/data/biographics/t2/version4.png
t/data/biographics/t2/version5.png
t/data/biographics/t2/version6.png
t/data/biographics/t2/version7.png
t/data/biographics/t2/version8.png
t/data/biographics/t2/version9.png
t/data/biographics/t3/version1.gif
t/data/biographics/t3/version1.png
t/data/biographics/t3/version2.gif
t/data/biographics/t3/version2.png
t/data/biographics/t3/version3.png
t/data/biographics/t3/version4.png
t/data/biographics/t3/version5.png
t/data/biographics/t3/version6.png
t/data/biographics/t3/version7.png
t/data/Bird_Ovomucoids.nex
t/data/BK000016-tpa.gbk
t/data/bl2seq.blastn
t/data/bl2seq.blastn.rev
t/data/bl2seq.blastx.out
t/data/bl2seq.bug940.out
t/data/bl2seq.out
t/data/bl2seq.tblastx.out
t/data/blast.report
t/data/blat.psLayout3
t/data/BLOSUM50
t/data/blosum62.bla
t/data/BN000066-tpa.embl
t/data/branchSite.mlc
t/data/brassica_ATH.WUBLASTN
t/data/bug2120.phd
t/data/c200-vs-yeast.BLASTN
t/data/c200-vs-yeast.BLASTN.m8
t/data/calm.swiss
t/data/catalase-webblast.BLASTP
t/data/cds-266.fas
t/data/chad100.scf
t/data/char-interleave.nex
t/data/char-matrix-spaces.nex
t/data/codeml.mlc
t/data/codeml315.mlc
t/data/codeml_lysozyme/2NG.dN
t/data/codeml_lysozyme/2NG.dS
t/data/codeml_lysozyme/2NG.t
t/data/codeml_lysozyme/4fold.nuc
t/data/codeml_lysozyme/lnf
t/data/codeml_lysozyme/lysozymeSmall.ctl
t/data/codeml_lysozyme/lysozymeSmall.trees
t/data/codeml_lysozyme/lysozymeSmall.txt
t/data/codeml_lysozyme/mlc
t/data/codeml_lysozyme/rst
t/data/codeml_lysozyme/rst1
t/data/codeml_lysozyme/rub
t/data/codeml_nssites.mlc
t/data/compLD_missingtest.prettybase
t/data/compLD_test.prettybase
t/data/component.ontology.test
t/data/component.ontology.test2
t/data/consed_project/edit_dir/test_project.contigs
t/data/consed_project/edit_dir/test_project.fasta
t/data/consed_project/edit_dir/test_project.fasta.log
t/data/consed_project/edit_dir/test_project.fasta.screen
t/data/consed_project/edit_dir/test_project.fasta.screen.ace.1
t/data/consed_project/edit_dir/test_project.fasta.screen.ace.2
t/data/consed_project/edit_dir/test_project.fasta.screen.contigs
t/data/consed_project/edit_dir/test_project.fasta.screen.contigs.qual
t/data/consed_project/edit_dir/test_project.fasta.screen.log
t/data/consed_project/edit_dir/test_project.fasta.screen.problems
t/data/consed_project/edit_dir/test_project.fasta.screen.problems.qual
t/data/consed_project/edit_dir/test_project.fasta.screen.qual
t/data/consed_project/edit_dir/test_project.fasta.screen.singlets
t/data/consed_project/edit_dir/test_project.fasta.screen.view
t/data/consed_project/edit_dir/test_project.newtags
t/data/consed_project/edit_dir/test_project.phrap.out
t/data/consed_project/edit_dir/test_project.screen.out
t/data/consed_project/edit_dir/test_project_to_alu.cross
t/data/consed_project/edit_dir/test_projectNewChromats.fof
t/data/consed_project/phd_dir/ML4922R.phd.1
t/data/consed_project/phd_dir/ML4924F.phd.1
t/data/consed_project/phd_dir/ML4924R.phd.1
t/data/consed_project/phd_dir/ML4947F.phd.1
t/data/crab.dat.cn
t/data/crab.nj
t/data/crab.njb
t/data/crypto.sim4-0
t/data/crypto.sim4-3
t/data/crypto.sim4-4
t/data/ctgdemo.fpc
t/data/cys1_dicdi.water
t/data/cysprot.fa
t/data/cysprot.msf
t/data/cysprot.needle
t/data/cysprot.tblastn
t/data/cysprot.water
t/data/cysprot1.fa
t/data/cysprot1.FASTA
t/data/cysprot1a.fa
t/data/cysprot1a.msf
t/data/cysprot1b.fa
t/data/cysprot1b.hmmsearch
t/data/cysprot1b.msf
t/data/cysprot1b.newick
t/data/cysprot_vs_gadfly.FASTA
t/data/D10483.gbk
t/data/D12555.gbk
t/data/dbfa/1.fa
t/data/dbfa/2.fa
t/data/dbfa/3.fa
t/data/dbfa/4.fa
t/data/dbfa/5.fa
t/data/dbfa/6.fa
t/data/dbfa/7.fa
t/data/directives.gff3
t/data/dmel_2Lchunk.gb
t/data/dna1.fa
t/data/dna2.fa
t/data/dnaE-bsub-prot.fa
t/data/dnaE-bsub.fa
t/data/dnaEbsub_ecoli.wublastx
t/data/dnaEbsub_ecoli.wutblastn
t/data/dnaEbsub_ecoli.wutblastx
t/data/DQ018368.gb
t/data/dq519393.gb
t/data/ECAPAH02.embl
t/data/ecoli-trna-qrna.out
t/data/ecoli_domains.rps.xml
t/data/ecoli_domains.rpsblast
t/data/ecolitst.bls
t/data/ecolitst.fa
t/data/ecolitst.noseqs.wublastp
t/data/ecolitst.wublastp
t/data/empty.bl2seq
t/data/entrezgene.dat
t/data/example.hap
t/data/example.phase
t/data/expected.blast.out
t/data/factor7.embl
t/data/footprinter.out
t/data/frac_problems.blast
t/data/geneid_1.0.out
t/data/genemark.out
t/data/genewise.out
t/data/genewise_output.paracel_btk
t/data/genomewise.out
t/data/genomic-seq.epcr
t/data/genomic-seq.fasta
t/data/genomic-seq.genscan
t/data/genomic-seq.mzef
t/data/Genscan.FastA
t/data/gf-s71.needle
t/data/glimmer.out
t/data/Glimmer2.out
t/data/Glimmer3.detail
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