#NEXUS BEGIN TAXA; DIMENSIONS ntax=163; TAXLABELS Chondrus_crispus_AAA18589.1 Leishmania_major_AAA19789.1 Cryptosporidium_parvum_AAA28295.1 Drosophila_melanogaster_AAA28320.1 Euplotes_crassus_AAA29122.1 Oxytricha_nova_AAA29393.1 Oxytricha_fallax_AAA29394.1 Plasmodium_falciparum_AAA29465.1 Plasmodium_falciparum_AAA29467.1 Pisaster_ochraceus_AAA29787.1 Pisaster_ochraceus_AAA29788.1 Physarum_polycephalum_AAA29973.1 Strongylocentrotus_purpuratus_AAA30030.1 Strongylocentrotus_purpuratus_AAA30032.1 Strongylocentrotus_purpuratus_AAA30042.1 Taenia_solium_AAA30092.1 Tetrahymena_thermophila_AAA30109.1 Trypanosoma_brucei_AAA30151.1 Trypanosoma_brucei_AAA30152.1 Emericella_nidulans_AAA33290.1 Phytophthora_infestans_AAA33749.1 Phytophthora_infestans_AAA33750.1 Glycine_max_AAA33939.1 Volvox_carteri_AAA34243.1 Kluyveromyces_lactis_AAA35251.1 Mus_musculus_AAA37141.1 Ctenopharyngodon_idella_AAA49197.1 Xenopus_laevis_AAA49638.1 Xenopus_laevis_AAA49639.1 Oxytricha_nova_AAA50195.1 Homo_sapiens_AAA51579.1 Anopheles_gambiae_AAA56881.1 Bactrocera_dorsalis_AAA62341.1 Bactrocera_dorsalis_AAA62342.1 Bactrocera_dorsalis_AAA62343.1 Bactrocera_dorsalis_AAA62344.1 Cricetulus_griseus_AAA64871.1 Cyprinus_carpio_AAA68886.1 Bos_taurus_AAA82873.1 Oxytricha_trifallax_AAA85836.1 Heliocidaris_tuberculata_AAA86534.1 Heliocidaris_erythrogramma_AAA86869.1 Heliocidaris_erythrogramma_AAA96348.1 Heliocidaris_tuberculata_AAA96349.1 Gallus_gallus_AAB12010.1 Tripneustes_gratilla_AAB31965.2 Naegleria_fowleri_AAB42183.1 Homo_sapiens_AAB59619.1 Arabidopsis_thaliana_AAB63535.1 Glycine_max_AAC05272.1 Toxoplasma_gondii_AAC13766.1 Mesostigma_viride_AAC16055.1 Candida_glabrata_AAC25760.1 Gossypium_hirsutum_AAC31886.1 Pichia_angusta_AAC34678.1 Bombyx_mori_AAC47432.1 Trichomonas_vaginalis_AAC47679.1 Sus_scrofa_AAC48692.1 Striga_asiatica_AAC49651.1 Striga_asiatica_AAC49652.1 Chlamydomonas_reinhardtii_AAC49834.1 Fugu_rubripes_AAC59889.1 Fugu_rubripes_AAC59891.1 Fugu_rubripes_AAC59892.1 Fugu_rubripes_AAC59893.1 Fugu_rubripes_AAC59894.1 Fugu_rubripes_AAC59897.1 Neurospora_crassa_AAC78496.1 Echinococcus_granulosus_AAC80573.1 Echinococcus_granulosus_AAC80574.1 Setaria_digitata_AAD13153.1 Oryzias_latipes_AAD14159.2 Schizophyllum_commune_AAD38204.1 Suillus_bovinus_AAD38849.1 Schizophyllum_commune_AAD38853.1 Suillus_bovinus_AAD38855.1 Plasmodium_falciparum_AAD55770.1 Penicillium_chrysogenum_AAF00007.1 Hypotrichida_sp_AAF00921.1 Urostyla_grandis_AAF00922.1 Halteria_grandinella_AAF00923.1 Arabidopsis_thaliana_AAF18605.1 Wuchereria_bancrofti_AAF25819.1 Rivulus_marmoratus_AAF26678.1 Pichia_pastoris_AAF27627.1 Naegleria_gruberi_AAF37002.1 Avena_nuda_AAF40438.1 Drosophila_melanogaster_AAF46098.1 Drosophila_melanogaster_AAF46640.1 Drosophila_melanogaster_AAF51800.1 Drosophila_melanogaster_AAF55198.1 Drosophila_melanogaster_AAF57954.1 Platichthys_flesus_AAF63665.1 Rhynchocypris_oxycephalus_AAF63689.1 Arabidopsis_thaliana_AAF69724.1 Ictalurus_punctatus_AAF81097.1 Hypophthalmichthys_molitrix_AAG17452.1 Rhodeus_notatus_AAG17453.1 Oxytricha_trifallax_AAG35198.1 Misgurnus_mizolepis_AAG48576.1 Arabidopsis_thaliana_AAG51045.1 Saccharomyces_bayanus_BAA02097.1 Halocynthia_roretzi_BAA06100.1 Cyanidioschyzon_merolae_BAA06866.1 Halocynthia_roretzi_BAA08112.1 Chlamydomonas_reinhardtii_BAA09449.1 Molgula_oculata_BAA11264.1 Molgula_oculata_BAA12860.1 Schizosaccharomyces_pombe_BAA21389.1 Saccharomyces_cerevisiae_BAA21512.1 Pneumocystis_carinii_BAA23210.1 Nannochloris_bacillaris_BAA25911.1 Oikopleura_longicauda_BAA86217.1 Coprinus_cinereus_BAA86222.1 Arabidopsis_thaliana_BAB01806.1 Acanthamoeba_castellanii_CAA23399.1 Glycine_max_CAA23728.1 Rattus_norvegicus_CAA24528.1 Rattus_norvegicus_CAA24529.1 Gallus_gallus_CAA24753.1 Gallus_gallus_CAA25004.1 Gallus_gallus_CAA26135.1 Gallus_gallus_CAA26486.1 Strongylocentrotus_franciscanus_CAA26877.1 Dictyostelium_discoideum_CAA27031.1 Dictyostelium_discoideum_CAA27032.1 Dictyostelium_discoideum_CAA27033.1 Dictyostelium_discoideum_CAA27034.1 Bombyx_mori_CAA28192.1 Xenopus_laevis_CAA28375.1 Bombyx_mori_CAA28818.1 Tetrahymena_pyriformis_CAA28824.1 Xenopus_laevis_CAA28979.1 Bombyx_mori_CAA29661.1 Thermomyces_lanuginosus_CAA30346.1 Physarum_polycephalum_CAA30629.1 Xenopus_laevis_CAA31041.1 Oryza_sativa_CAA33874.1 Phytophthora_megasperma_CAA33907.1 Candida_albicans_CAA34413.1 Caenorhabditis_elegans_CAA34717.1 Caenorhabditis_elegans_CAA34718.1 Solanum_tuberosum_CAA39278.1 Solanum_tuberosum_CAA39279.1 Solanum_tuberosum_CAA39280.1 Solanum_tuberosum_CAA39281.1 Solanum_tuberosum_CAA39282.1 Achlya_bisexualis_CAA42559.1 Nicotiana_tabacum_CAA45149.1 Podocoryne_carnea_CAA48798.1 Puccinia_graminis_CAA54848.1 Lumbricus_terrestris_CAA65364.1 Lumbricus_terrestris_CAA65365.1 Helicoverpa_armigera_CAA66218.1 Histriculus_cavicola_CAA72778.1 Caenorhabditis_elegans_CAB04675.1 Caenorhabditis_elegans_CAB05817.1 Brugia_malayi_CAB06627.1 Candida_dubliniensis_CAB53863.1 Yarrowia_lipolytica_CAB62086.1 Arabidopsis_thaliana_CAB62322.1 Arabidopsis_thaliana_CAB88337.1 Leishmania_major_CAC22667.1; END; BEGIN CHARACTERS; DIMENSIONS ntax=163 nchar=64; FORMAT datatype=standard gap=- missing=?; CHARLABELS 3-1 4-1 5-1 14-0 15-0 17-1 19-1 19-2 20-0 21-1 25-0 27-1 27-2 29-1 31-1 38-1 38-2 48-0 48-1 48-2 51-0 58-0 62-2 70-1 92-0 100-1 107-0 113-0 121-0 123-2 126-1 129-0 139-2 145-0 157-1 175-0 175-1 202-1 211-1 218-1 221-0 236-0 255-0 262-2 264-2 272-0 276-0 276-1 287-2 297-1 309-0 317-1 324-0 330-0 332-2 333-0 336-0 338-0 346-2 349-2 364-0 374-0 408-1 409-0; MATRIX Chondrus_crispus_AAA18589.1 0000000000000000010000000000000000000000000000000000000000000000 Leishmania_major_AAA19789.1 0000000000000000000000000000000000000000000000000000000000000000 Cryptosporidium_parvum_AAA28295.1 0000000000000000000000000000000000000000000000000000000000000000 Drosophila_melanogaster_AAA28320.1 0000000000000000000000000000000000000000000000000000000000000000 Euplotes_crassus_AAA29122.1 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0000000000000000000000000000000000000000000000000000000000000000 Nicotiana_tabacum_CAA45149.1 0000000000100000000000000000000000100000000000000000000000001000 Podocoryne_carnea_CAA48798.1 0000000000000000000000001000000100000000000000000000000000000000 Puccinia_graminis_CAA54848.1 1000000000001000000001000000001000000000000100000000000000100100 Lumbricus_terrestris_CAA65364.1 0000000000000000010000000000000000000000000000000000000000000000 Lumbricus_terrestris_CAA65365.1 0000000000000000010000000000000000000000000000000000000000000000 Helicoverpa_armigera_CAA66218.1 0000000000000000000000000000010000000000000000000000000000000000 Histriculus_cavicola_CAA72778.1 0000000000000000000000000000000000000000000000000000000000000000 Caenorhabditis_elegans_CAB04675.1 0000000000000000000000010000000000000000000000000000001000000000 Caenorhabditis_elegans_CAB05817.1 0000000000000000000000000000000000010000000000000000001000000000 Brugia_malayi_CAB06627.1 0000000000000000000001000000000000010000000000100000000100000000 Candida_dubliniensis_CAB53863.1 0100000000000000000000000000000000000000000000000000000000000000 Yarrowia_lipolytica_CAB62086.1 1000000000000000000000000000000000000000000000000000000000000000 Arabidopsis_thaliana_CAB62322.1 0000000000100000000000000000000000100000000000000000000000001000 Arabidopsis_thaliana_CAB88337.1 0000000000100000000000000000000000100000000000000000000000001000 Leishmania_major_CAC22667.1 0000000000000000000000000000000000000000000000000000000000000000 ; END; BEGIN ASSUMPTIONS; WTSET MySoapWeights (VECTOR) = 0.286 0.143 0.143 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0.571 0.571 1 1 1 1 1 1 1 1 1 1 1 1 1 0.571 1 1; END; BEGIN TREES; TREE actin = (Euplotes_crassus_AAA29122.1:0.51457,(Oxytricha_nova_AAA50195.1:0.4725,(Trichomonas_vaginalis_AAC47679.1:0.21792,((((((Physarum_polycephalum_CAA30629.1:0.00703,Physarum_polycephalum_AAA29973.1:0.20767)inode9:0.07889[1],Acanthamoeba_castellanii_CAA23399.1:0.07816)inode8:0.02124[1],((Nannochloris_bacillaris_BAA25911.1:0.1731,Cyanidioschyzon_merolae_BAA06866.1:0.3884)inode11:0.06763[1],((((Plasmodium_falciparum_AAA29467.1:0.59865,Toxoplasma_gondii_AAC13766.1:0.09027)inode15:0.08292[1],(((Leishmania_major_AAA19789.1:0.00395,Leishmania_major_CAC22667.1:0.00105)inode18:0.15424[1],(Trypanosoma_brucei_AAA30152.1:0.01154,Trypanosoma_brucei_AAA30151.1:0.00472)inode19:0.18998[1])inode17:0.17042[1],Chlamydomonas_reinhardtii_AAC49834.1:0.74446)inode16:0.13984[1])inode14:0.03566[0.931],((Phytophthora_infestans_AAA33749.1:0.04858,(Phytophthora_infestans_AAA33750.1:0.11617,Phytophthora_megasperma_CAA33907.1:0.09169)inode22:0.18672[1])inode21:0.02095[0.702],Achlya_bisexualis_CAA42559.1:0.14636)inode20:0.07527[1])inode13:0.03517[1],((Chlamydomonas_reinhardtii_BAA09449.1:0.06497,Volvox_carteri_AAA34243.1:0.13964)inode24:0.08037[1],(Mesostigma_viride_AAC16055.1:0.0924,((Avena_nuda_AAF40438.1:0.04661,Oryza_sativa_CAA33874.1:0.05291)inode27:0.02767[0.986],((Striga_asiatica_AAC49651.1:0.08556,Striga_asiatica_AAC49652.1:0.07153)inode29:0.03864[1],((((Arabidopsis_thaliana_CAB62322.1:0.12718,Arabidopsis_thaliana_CAB88337.1:0.15514)inode33:0.02988[0.99],(Solanum_tuberosum_CAA39279.1:0.11754,Solanum_tuberosum_CAA39282.1:0.08543)inode34:0.07022[1])inode32:0.02063[0.97],(((Solanum_tuberosum_CAA39278.1:0.07746,Solanum_tuberosum_CAA39280.1:0.05359)inode37:0.04953[1],Nicotiana_tabacum_CAA45149.1:0.12829)inode36:0.03137[0.998],(Gossypium_hirsutum_AAC31886.1:0.08724,(Glycine_max_AAA33939.1:0.17178,Glycine_max_AAC05272.1:0.10741)inode39:0.02178[0.643])inode38:0.02781[0.904])inode35:0.0217[0.971])inode31:0.02767[1],(Arabidopsis_thaliana_AAG51045.1:0.0927,((Glycine_max_CAA23728.1:0.13106,Solanum_tuberosum_CAA39281.1:0.14073)inode42:0.04635[1],((Arabidopsis_thaliana_AAF69724.1:0.04735,Arabidopsis_thaliana_BAB01806.1:0.05804)inode44:0.07987[1],(Arabidopsis_thaliana_AAB63535.1:0.15785,Arabidopsis_thaliana_AAF18605.1:0.09121)inode45:0.1844[1])inode43:0.03678[0.894])inode41:0.03431[0.941])inode40:0.02294[0.678])inode30:0.03346[0.976])inode28:0.06373[1])inode26:0.10928[1])inode25:0.04188[1])inode23:0.01568[0.957])inode12:0.00869[0.643])inode10:0.03324[1])inode7:0.01473[0.673],(((Echinococcus_granulosus_AAC80574.1:0.18842,(Drosophila_melanogaster_AAF57954.1:0.72692,Echinococcus_granulosus_AAC80573.1:0.11371)inode49:0.03808[0.486])inode48:0.06997[0.945],Taenia_solium_AAA30092.1:0.08523)inode47:0.05094[0.954],((((Heliocidaris_erythrogramma_AAA86869.1:0.00471,Heliocidaris_tuberculata_AAA86534.1:0.00197)inode53:0.05306[1],(((Tripneustes_gratilla_AAB31965.2:0.02519,((Heliocidaris_erythrogramma_AAA96348.1:0.00917,Heliocidaris_tuberculata_AAA96349.1:0.00811)inode58:0.01482[1],((Strongylocentrotus_purpuratus_AAA30032.1:0.01166,Strongylocentrotus_purpuratus_AAA30042.1:0.00694)inode60:0.00986[1],(Strongylocentrotus_purpuratus_AAA30030.1:0.05602,Strongylocentrotus_franciscanus_CAA26877.1:0.01069)inode61:0.00438[0.87])inode59:0.00744[1])inode57:0.007[0.718])inode56:0.04389[1],(Pisaster_ochraceus_AAA29787.1:0.0669,Pisaster_ochraceus_AAA29788.1:0.0595)inode62:0.04522[1])inode55:0.01495[0.999],(Lumbricus_terrestris_CAA65365.1:0.08019,Lumbricus_terrestris_CAA65364.1:0.05399)inode63:0.03732[1])inode54:0.00957[0.601])inode52:0.02204[1],((((Halocynthia_roretzi_BAA08112.1:0.14727,(((Molgula_oculata_BAA12860.1:0.07206,(Molgula_oculata_BAA11264.1:0.089,Halocynthia_roretzi_BAA06100.1:0.16125)inode71:0.08709[1])inode70:0.03343[0.999],Oikopleura_longicauda_BAA86217.1:0.09188)inode69:0.04068[1],(((Saccharomyces_cerevisiae_BAA21512.1:0.02896,Saccharomyces_bayanus_BAA02097.1:0.02067)inode74:0.01849[0.964],(Kluyveromyces_lactis_AAA35251.1:0.04366,Candida_glabrata_AAC25760.1:0.03991)inode75:0.02639[0.986])inode73:0.14508[1],(Podocoryne_carnea_CAA48798.1:0.12949,(Dictyostelium_discoideum_CAA27031.1:0.00391,((Dictyostelium_discoideum_CAA27033.1:0.01498,Dictyostelium_discoideum_CAA27034.1:0.07466)inode79:0.06883[1],Dictyostelium_discoideum_CAA27032.1:0.01991)inode78:0.05336[1])inode77:0.09742[1])inode76:0.03764[0.785])inode72:0.0361[0.999])inode68:0.01735[0.758])inode67:0.02376[0.999],((Wuchereria_bancrofti_AAF25819.1:0.03785,Brugia_malayi_CAB06627.1:0.0391)inode81:0.14303[1],Setaria_digitata_AAD13153.1:0.18154)inode80:0.05735[1])inode66:0.03926[1],((Caenorhabditis_elegans_CAB04675.1:0.00071,Caenorhabditis_elegans_CAA34718.1:0.00222)inode83:0.03355[1],Caenorhabditis_elegans_CAA34717.1:0.00514)inode82:0.05873[1])inode65:0.02009[0.588],Caenorhabditis_elegans_CAB05817.1:0.13685)inode64:0.03465[1])inode51:0.03088[1],(((Misgurnus_mizolepis_AAG48576.1:0.07273,((Homo_sapiens_AAA51579.1:0.07883,(Rattus_norvegicus_CAA24528.1:0.03211,Cricetulus_griseus_AAA64871.1:0.01166)inode89:0.03673[1])inode88:0.03648[1],((((Rivulus_marmoratus_AAF26678.1:0.02288,(Fugu_rubripes_AAC59889.1:0.02718,Platichthys_flesus_AAF63665.1:0.02276)inode94:0.00659[0.734])inode93:0.00713[0.819],Oryzias_latipes_AAD14159.2:0.03373)inode92:0.0358[1],((((Xenopus_laevis_AAA49638.1:0.01937,Xenopus_laevis_AAA49639.1:0.01829)inode98:0.08479[1],Fugu_rubripes_AAC59891.1:0.12613)inode97:0.02163[0.964],Gallus_gallus_CAA25004.1:0.05347)inode96:0.02209[0.987],(Cyprinus_carpio_AAA68886.1:0.00494,((Ctenopharyngodon_idella_AAA49197.1:0.00374,Hypophthalmichthys_molitrix_AAG17452.1:0.00612)inode101:0.00931[1],(Rhodeus_notatus_AAG17453.1:0.01094,Rhynchocypris_oxycephalus_AAF63689.1:0.01177)inode102:0.00604[0.997])inode100:0.00673[0.939])inode99:0.02834[1])inode95:0.02013[1])inode91:0.00878[0.902],Gallus_gallus_CAA26486.1:0.10935)inode90:0.01391[0.99])inode87:0.01649[0.996])inode86:0.04011[1],(((((Fugu_rubripes_AAC59897.1:0.08387,Fugu_rubripes_AAC59894.1:0.01266)inode107:0.07413[1],((Homo_sapiens_AAB59619.1:0.07835,(Gallus_gallus_CAA26135.1:0.09979,(Gallus_gallus_AAB12010.1:0.12931,Xenopus_laevis_CAA28979.1:0.10186)inode111:0.02824[0.579])inode110:0.02054[0.929])inode109:0.01761[0.884],(Xenopus_laevis_CAA28375.1:0.0551,Xenopus_laevis_CAA31041.1:0.12165)inode112:0.02968[1])inode108:0.02051[0.999])inode106:0.02299[0.999],(((Sus_scrofa_AAC48692.1:0.02197,Bos_taurus_AAA82873.1:0.03247)inode115:0.04563[1],(Mus_musculus_AAA37141.1:0.00827,Rattus_norvegicus_CAA24529.1:0.02308)inode116:0.03652[1])inode114:0.02652[1],Gallus_gallus_CAA24753.1:0.06497)inode113:0.02082[1])inode105:0.01401[0.924],(Fugu_rubripes_AAC59893.1:0.09448,Fugu_rubripes_AAC59892.1:0.06133)inode117:0.01796[0.979])inode104:0.00841[0.866],Ictalurus_punctatus_AAF81097.1:0.0691)inode103:0.05709[1])inode85:0.02658[0.887],((Drosophila_melanogaster_AAF46098.1:0.0545,(Anopheles_gambiae_AAA56881.1:0.07745,((Bombyx_mori_AAC47432.1:0.01227,Bombyx_mori_CAA28192.1:0.01521)inode122:0.0667[1],Helicoverpa_armigera_CAA66218.1:0.04263)inode121:0.05449[1])inode120:0.01816[0.893])inode119:0.0116[0.864],((Drosophila_melanogaster_AAF55198.1:0.06608,Drosophila_melanogaster_AAF51800.1:0.06618)inode124:0.03518[1],((Bombyx_mori_CAA28818.1:0.03398,Bombyx_mori_CAA29661.1:0.10021)inode126:0.05725[1],(Drosophila_melanogaster_AAA28320.1:0.06729,((Bactrocera_dorsalis_AAA62342.1:0.03766,(Bactrocera_dorsalis_AAA62343.1:0.03007,(Bactrocera_dorsalis_AAA62344.1:0.11011,Bactrocera_dorsalis_AAA62341.1:0.1029)inode131:0.05936[1])inode130:0.03779[1])inode129:0.07658[1],Drosophila_melanogaster_AAF46640.1:0.01349)inode128:0.02214[1])inode127:0.01277[0.996])inode125:0.00671[0.873])inode123:0.01322[1])inode118:0.01625[0.948])inode84:0.01991[0.84])inode50:0.00719[0.409])inode46:0.01191[0.862])inode6:0.0136[0.661],((((Pneumocystis_carinii_BAA23210.1:0.29746,Schizosaccharomyces_pombe_BAA21389.1:0.09791)inode135:0.03471[0.797],((((Pichia_angusta_AAC34678.1:0.09532,Pichia_pastoris_AAF27627.1:0.09264)inode139:0.03468[1],(Candida_dubliniensis_CAB53863.1:0.00529,Candida_albicans_CAA34413.1:0.01751)inode140:0.07662[1])inode138:0.05297[1],(((Tetrahymena_pyriformis_CAA28824.1:0.04269,Tetrahymena_thermophila_AAA30109.1:0.03077)inode143:0.2382[1],((Plasmodium_falciparum_AAA29465.1:0.00213,Plasmodium_falciparum_AAD55770.1:0.00208)inode145:0.19307[1],Cryptosporidium_parvum_AAA28295.1:0.13048)inode144:0.09277[1])inode142:0.02691[0.603],(Naegleria_gruberi_AAF37002.1:0.21879,Naegleria_fowleri_AAB42183.1:0.04142)inode146:0.08243[1])inode141:0.06075[1])inode137:0.08526[1],Puccinia_graminis_CAA54848.1:0.15756)inode136:0.05394[1])inode134:0.10576[1],(Yarrowia_lipolytica_CAB62086.1:0.13242,(Thermomyces_lanuginosus_CAA30346.1:0.09336,(Neurospora_crassa_AAC78496.1:0.05155,(Penicillium_chrysogenum_AAF00007.1:0.04247,Emericella_nidulans_AAA33290.1:0.06768)inode150:0.01287[0.919])inode149:0.01372[0.937])inode148:0.02632[1])inode147:0.01525[0.997])inode133:0.01973[1],(((Schizophyllum_commune_AAD38853.1:0.02728,Schizophyllum_commune_AAD38204.1:0.32969)inode153:0.07552[1],(Suillus_bovinus_AAD38849.1:0.08483,Suillus_bovinus_AAD38855.1:0.07774)inode154:0.07617[1])inode152:0.02092[0.991],Coprinus_cinereus_BAA86222.1:0.06969)inode151:0.04901[1])inode132:0.02332[1])inode5:0.07554[1],Chondrus_crispus_AAA18589.1:0.30023)inode4:0.06369[1])inode3:0.15279[1])inode2:0.0898[1],(Urostyla_grandis_AAF00922.1:0.10854,((((Oxytricha_trifallax_AAG35198.1:0.00232,Halteria_grandinella_AAF00923.1:0.00522)inode159:0.01063[1],(Oxytricha_fallax_AAA29394.1:0.02714,Oxytricha_trifallax_AAA85836.1:0.01303)inode160:0.01096[1])inode158:0.05825[1],(Oxytricha_nova_AAA29393.1:0.10602,Hypotrichida_sp_AAF00921.1:0.05415)inode161:0.022[0.999])inode157:0.01068[0.522],Histriculus_cavicola_CAA72778.1:0.0649)inode156:0.0872[1])inode155:0.12639[1])root; END; BEGIN SETS; TAXSET protists = Plasmodium_falciparum_AAD55770.1 Phytophthora_infestans_AAA33749.1 Histriculus_cavicola_CAA72778.1 Oxytricha_nova_AAA29393.1 Toxoplasma_gondii_AAC13766.1 Plasmodium_falciparum_AAA29467.1 Euplotes_crassus_AAA29122.1 Cyanidioschyzon_merolae_BAA06866.1 Phytophthora_infestans_AAA33750.1 Leishmania_major_AAA19789.1 Tetrahymena_pyriformis_CAA28824.1 Tetrahymena_thermophila_AAA30109.1 Dictyostelium_discoideum_CAA27034.1 Trypanosoma_brucei_AAA30152.1 Chondrus_crispus_AAA18589.1 Oxytricha_fallax_AAA29394.1 Halteria_grandinella_AAF00923.1 Physarum_polycephalum_AAA29973.1 Plasmodium_falciparum_AAA29465.1 Trichomonas_vaginalis_AAC47679.1 Dictyostelium_discoideum_CAA27032.1 Acanthamoeba_castellanii_CAA23399.1 Naegleria_gruberi_AAF37002.1 Cryptosporidium_parvum_AAA28295.1 Oxytricha_trifallax_AAA85836.1 Leishmania_major_CAC22667.1 Oxytricha_nova_AAA50195.1 Dictyostelium_discoideum_CAA27031.1 Achlya_bisexualis_CAA42559.1 Dictyostelium_discoideum_CAA27033.1 Oxytricha_trifallax_AAG35198.1 Naegleria_fowleri_AAB42183.1 Trypanosoma_brucei_AAA30151.1 Hypotrichida_sp_AAF00921.1 Phytophthora_megasperma_CAA33907.1 Physarum_polycephalum_CAA30629.1; TAXSET plants = Striga_asiatica_AAC49651.1 Glycine_max_CAA23728.1 Mesostigma_viride_AAC16055.1 Setaria_digitata_AAD13153.1 Glycine_max_AAA33939.1 Chlamydomonas_reinhardtii_AAC49834.1 Volvox_carteri_AAA34243.1 Solanum_tuberosum_CAA39281.1 Glycine_max_AAC05272.1 Striga_asiatica_AAC49652.1 Arabidopsis_thaliana_AAF18605.1 Oryza_sativa_CAA33874.1 Solanum_tuberosum_CAA39279.1 Solanum_tuberosum_CAA39278.1 Solanum_tuberosum_CAA39282.1 Arabidopsis_thaliana_CAB88337.1 Chlamydomonas_reinhardtii_BAA09449.1 Solanum_tuberosum_CAA39280.1 Arabidopsis_thaliana_AAF69724.1 Arabidopsis_thaliana_AAB63535.1 Gossypium_hirsutum_AAC31886.1 Avena_nuda_AAF40438.1 Arabidopsis_thaliana_CAB62322.1 Nannochloris_bacillaris_BAA25911.1 Nicotiana_tabacum_CAA45149.1 Arabidopsis_thaliana_BAB01806.1 Arabidopsis_thaliana_AAG51045.1; TAXSET fungi = Saccharomyces_bayanus_BAA02097.1 Candida_glabrata_AAC25760.1 Schizophyllum_commune_AAD38853.1 Pichia_pastoris_AAF27627.1 Suillus_bovinus_AAD38849.1 Pichia_angusta_AAC34678.1 Emericella_nidulans_AAA33290.1 Suillus_bovinus_AAD38855.1 Schizosaccharomyces_pombe_BAA21389.1 Neurospora_crassa_AAC78496.1 Penicillium_chrysogenum_AAF00007.1 Coprinus_cinereus_BAA86222.1 Thermomyces_lanuginosus_CAA30346.1 Puccinia_graminis_CAA54848.1 Schizophyllum_commune_AAD38204.1 Yarrowia_lipolytica_CAB62086.1 Pneumocystis_carinii_BAA23210.1 Saccharomyces_cerevisiae_BAA21512.1 Candida_dubliniensis_CAB53863.1 Kluyveromyces_lactis_AAA35251.1 Candida_albicans_CAA34413.1; TAXSET animals = Rattus_norvegicus_CAA24529.1 Bactrocera_dorsalis_AAA62341.1 Caenorhabditis_elegans_CAB05817.1 Fugu_rubripes_AAC59893.1 Drosophila_melanogaster_AAF55198.1 Strongylocentrotus_franciscanus_CAA26877.1 Strongylocentrotus_purpuratus_AAA30042.1 Fugu_rubripes_AAC59897.1 Heliocidaris_tuberculata_AAA96349.1 Rattus_norvegicus_CAA24528.1 Lumbricus_terrestris_CAA65364.1 Drosophila_melanogaster_AAF57954.1 Halocynthia_roretzi_BAA06100.1 Bactrocera_dorsalis_AAA62343.1 Platichthys_flesus_AAF63665.1 Xenopus_laevis_CAA28375.1 Halocynthia_roretzi_BAA08112.1 Strongylocentrotus_purpuratus_AAA30030.1 Bombyx_mori_AAC47432.1 Heliocidaris_tuberculata_AAA86534.1 Drosophila_melanogaster_AAF46098.1 Bos_taurus_AAA82873.1 Ictalurus_punctatus_AAF81097.1 Mus_musculus_AAA37141.1 Helicoverpa_armigera_CAA66218.1 Molgula_oculata_BAA11264.1 Echinococcus_granulosus_AAC80574.1 Fugu_rubripes_AAC59894.1 Bombyx_mori_CAA29661.1 Gallus_gallus_CAA25004.1 Homo_sapiens_AAA51579.1 Drosophila_melanogaster_AAF51800.1 Anopheles_gambiae_AAA56881.1 Drosophila_melanogaster_AAF46640.1 Pisaster_ochraceus_AAA29788.1 Oikopleura_longicauda_BAA86217.1 Oryzias_latipes_AAD14159.2 Molgula_oculata_BAA12860.1 Heliocidaris_erythrogramma_AAA96348.1 Bactrocera_dorsalis_AAA62342.1 Taenia_solium_AAA30092.1 Xenopus_laevis_CAA28979.1 Drosophila_melanogaster_AAA28320.1 Gallus_gallus_CAA24753.1 Fugu_rubripes_AAC59889.1 Xenopus_laevis_AAA49639.1 Heliocidaris_erythrogramma_AAA86869.1 Wuchereria_bancrofti_AAF25819.1 Pisaster_ochraceus_AAA29787.1 Gallus_gallus_CAA26486.1 Caenorhabditis_elegans_CAA34717.1 Gallus_gallus_AAB12010.1 Cricetulus_griseus_AAA64871.1 Bombyx_mori_CAA28818.1 Bactrocera_dorsalis_AAA62344.1 Sus_scrofa_AAC48692.1 Hypophthalmichthys_molitrix_AAG17452.1 Caenorhabditis_elegans_CAB04675.1 Caenorhabditis_elegans_CAA34718.1 Xenopus_laevis_CAA31041.1 Ctenopharyngodon_idella_AAA49197.1 Urostyla_grandis_AAF00922.1 Fugu_rubripes_AAC59892.1 Homo_sapiens_AAB59619.1 Podocoryne_carnea_CAA48798.1 Echinococcus_granulosus_AAC80573.1 Rhynchocypris_oxycephalus_AAF63689.1 Xenopus_laevis_AAA49638.1 Cyprinus_carpio_AAA68886.1 Strongylocentrotus_purpuratus_AAA30032.1 Rivulus_marmoratus_AAF26678.1 Brugia_malayi_CAB06627.1 Tripneustes_gratilla_AAB31965.2 Gallus_gallus_CAA26135.1 Rhodeus_notatus_AAG17453.1 Bombyx_mori_CAA28192.1 Misgurnus_mizolepis_AAG48576.1 Fugu_rubripes_AAC59891.1 Lumbricus_terrestris_CAA65365.1; ; END;