#!/usr/local/bin/perl -w
# Before `make install' is performed this script should be runnable with
# `make test'. After `make install' it should work as `perl access.t'
##################### We start with some black magic to print on failure.
use strict;
use warnings;
use Test::More tests => 5;
use UMLS::Interface;
use File::Spec;
use File::Path;
if(!(-d "t")) {
print STDERR "Error - program must be run from UMLS::Similarity\n";
print STDERR "directory as : perl t/create-icfrequency.t \n";
exit;
}
# initialize option hash
my %option_hash = ();
# set the option hash
$option_hash{"t"} = 1;
# connect to the UMLS-Interface
my $umls = UMLS::Interface->new(\%option_hash);
ok($umls);
# get the version of umls that is being used
my $version = $umls->version();
# set the key directory (create it if it doesn't exist)
my $keydir = File::Spec->catfile('t','key', $version);
if(! (-e $keydir) ) {
File::Path->make_path($keydir);
}
# set the tests
my $perl = $^X;
my $util_prg = File::Spec->catfile('utils', 'create-icfrequency.pl');
# set the input/outputfile
my $inputfile = File::Spec->catfile('t','options','plain_text');
my $outputfile = File::Spec->catfile('t','output', 'create-icfrequency.output');
# remove the output file if it exists
File::Path->remove_tree($outputfile);
# set the key files
my $filekey = File::Spec->catfile('t', 'key', $version, 'create-icfrequency.key');
my $commandkey = File::Spec->catfile('t', 'key', $version, 'create-icfrequency.command');
# run the program
my $commandline = `$perl $util_prg $outputfile $inputfile 2>&1`;
print "$util_prg $outputfile $inputfile\n";
# check the output
my $output = "";
open(OUT, $outputfile) || die "Could not open outputfile $outputfile\n";
while(<OUT>) { $output .= $_; } close OUT;
if(-e $filekey) {
ok (open FKEY, $filekey) or diag "Could not open $filekey: $!";
my $key = "";
while(<FKEY>) { $key .= $_; } close FKEY;
cmp_ok($output, 'eq', $key);
}
else {
ok(open FKEY, ">$filekey") || diag "Could not open $filekey: $!";
print FKEY $output;
close FKEY;
SKIP: {
skip ("Generating key, no need to run test", 1);
}
}
# check the command line
if(-e $commandkey) {
ok (open CKEY, $commandkey) or diag "Could not open $commandkey: $!";
my $key = "";
while(<CKEY>) { $key .= $_; } close CKEY;
cmp_ok($commandline, 'eq', $key);
}
else {
ok(open CKEY, ">$commandkey") || diag "Could not open $commandkey: $!";
print CKEY $commandline;
close CKEY;
SKIP: {
skip ("Generating key, no need to run test", 1);
}
}
# remove output file
File::Path->remove_tree($outputfile);